Literature DB >> 20232063

Metabolic flux distributions: genetic information, computational predictions, and experimental validation.

Lars M Blank1, Lars Kuepfer.   

Abstract

Flux distributions in intracellular metabolic networks are of immense interest to fundamental and applied research, since they are quantitative descriptors of the phenotype and the operational mode of metabolism in the face of external growth conditions. In particular, fluxes are of relevance because they do not belong to the cellular inventory (e.g., transcriptome, proteome, metabolome), but are rather quantitative moieties, which link the phenotype of a cell to the specific metabolic mode of operation. A frequent application of measuring and redirecting intracellular fluxes is strain engineering, which ultimately aims at shifting metabolic activity toward a desired product to achieve a high yield and/or rate. In this article, we first review the assessment of intracellular flux distributions by either qualitative or rather quantitative computational methods and also discuss methods for experimental measurements. The tools at hand will then be exemplified on strain engineering projects from the literature. Finally, the achievements are discussed in the context of future developments in Metabolic Engineering and Synthetic Biology.

Mesh:

Year:  2010        PMID: 20232063     DOI: 10.1007/s00253-010-2506-6

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  5 in total

Review 1.  Molecular-level tradeoffs and metabolic adaptation to simultaneous stressors.

Authors:  Ross P Carlson; Reed L Taffs
Journal:  Curr Opin Biotechnol       Date:  2010-07-14       Impact factor: 9.740

2.  Proline availability regulates proline-4-hydroxylase synthesis and substrate uptake in proline-hydroxylating recombinant Escherichia coli.

Authors:  Francesco Falcioni; Lars M Blank; Oliver Frick; Andreas Karau; Bruno Bühler; Andreas Schmid
Journal:  Appl Environ Microbiol       Date:  2013-03-01       Impact factor: 4.792

3.  Flux-p: automating metabolic flux analysis.

Authors:  Birgitta E Ebert; Anna-Lena Lamprecht; Bernhard Steffen; Lars M Blank
Journal:  Metabolites       Date:  2012-11-12

4.  Let's talk about flux or the importance of (intracellular) reaction rates.

Authors:  Lars M Blank
Journal:  Microb Biotechnol       Date:  2016-11-11       Impact factor: 5.813

5.  Integrating cellular metabolism into a multiscale whole-body model.

Authors:  Markus Krauss; Stephan Schaller; Steffen Borchers; Rolf Findeisen; Jörg Lippert; Lars Kuepfer
Journal:  PLoS Comput Biol       Date:  2012-10-25       Impact factor: 4.475

  5 in total

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