Literature DB >> 20637598

Molecular-level tradeoffs and metabolic adaptation to simultaneous stressors.

Ross P Carlson1, Reed L Taffs.   

Abstract

Life is a dynamic process driven by the complex interplay between physical constraints and selection pressures, ranging from nutrient limitation to inhibitory substances to predators. These stressors are not mutually exclusive; microbes have faced concurrent challenges for eons. Genome-enabled systems biology approaches are adapting economic and ecological concepts like tradeoff curves and strategic resource allocation theory to analyze metabolic adaptations to simultaneous stressors. These methodologies can accurately describe and predict metabolic adaptations to concurrent stresses by considering the tradeoff between investment of limiting resources into enzymatic machinery and the resulting cellular function. The approaches represent promising links between computational biology and well-established economic and ecological methodologies for analyzing the interplay between physical constraints and microbial fitness.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20637598      PMCID: PMC2952661          DOI: 10.1016/j.copbio.2010.05.011

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  43 in total

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Journal:  J Bacteriol       Date:  2003-05       Impact factor: 3.490

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Review 7.  Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics.

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8.  Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli.

Authors:  Elizabeth L Murray; Tyrrell Conway
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

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Authors:  Gareth Butland; Mohan Babu; J Javier Díaz-Mejía; Fedyshyn Bohdana; Sadhna Phanse; Barbara Gold; Wenhong Yang; Joyce Li; Alla G Gagarinova; Oxana Pogoutse; Hirotada Mori; Barry L Wanner; Henry Lo; Jas Wasniewski; Constantine Christopolous; Mehrab Ali; Pascal Venn; Anahita Safavi-Naini; Natalie Sourour; Simone Caron; Ja-Yeon Choi; Ludovic Laigle; Anaies Nazarians-Armavil; Avnish Deshpande; Sarah Joe; Kirill A Datsenko; Natsuko Yamamoto; Brenda J Andrews; Charles Boone; Huiming Ding; Bilal Sheikh; Gabriel Moreno-Hagelseib; Jack F Greenblatt; Andrew Emili
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

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Authors:  A Varma; B O Palsson
Journal:  Appl Environ Microbiol       Date:  1994-10       Impact factor: 4.792

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  17 in total

1.  Aerobically respiring prokaryotic strains exhibit a broader temperature-pH-salinity space for cell division than anaerobically respiring and fermentative strains.

Authors:  Jesse P Harrison; Luke Dobinson; Kenneth Freeman; Ross McKenzie; Dale Wyllie; Sophie L Nixon; Charles S Cockell
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

Review 2.  Pseudomonad reverse carbon catabolite repression, interspecies metabolite exchange, and consortial division of labor.

Authors:  Heejoon Park; S Lee McGill; Adrienne D Arnold; Ross P Carlson
Journal:  Cell Mol Life Sci       Date:  2019-11-25       Impact factor: 9.261

3.  Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity.

Authors:  Hans C Bernstein; Steven D Paulson; Ross P Carlson
Journal:  J Biotechnol       Date:  2011-10-12       Impact factor: 3.307

4.  Quorum Sensing Communication Modules for Microbial Consortia.

Authors:  Spencer R Scott; Jeff Hasty
Journal:  ACS Synth Biol       Date:  2016-05-19       Impact factor: 5.110

5.  Physiological, biomass elemental composition and proteomic analyses of Escherichia coli ammonium-limited chemostat growth, and comparison with iron- and glucose-limited chemostat growth.

Authors:  James Patrick Folsom; Ross P Carlson
Journal:  Microbiology       Date:  2015-05-26       Impact factor: 2.777

6.  Integrated molecular, physiological and in silico characterization of two Halomonas isolates from industrial brine.

Authors:  Ross P Carlson; Olusegun Oshota; Matt Shipman; Justin A Caserta; Ping Hu; Charles W Saunders; Jun Xu; Zackary J Jay; Nancy Reeder; Abigail Richards; Charles Pettigrew; Brent M Peyton
Journal:  Extremophiles       Date:  2016-02-18       Impact factor: 2.395

Review 7.  Mini-review: Lactoferrin: a bioinspired, anti-biofilm therapeutic.

Authors:  M C Ammons; V Copié
Journal:  Biofouling       Date:  2013       Impact factor: 3.209

8.  Physiological and proteomic analysis of Escherichia coli iron-limited chemostat growth.

Authors:  James Patrick Folsom; Albert E Parker; Ross P Carlson
Journal:  J Bacteriol       Date:  2014-05-16       Impact factor: 3.490

9.  Engineering microbial consortia for controllable outputs.

Authors:  Stephen R Lindemann; Hans C Bernstein; Hyun-Seob Song; Jim K Fredrickson; Matthew W Fields; Wenying Shou; David R Johnson; Alexander S Beliaev
Journal:  ISME J       Date:  2016-03-11       Impact factor: 10.302

10.  Differential Response of Bacterial Microdiversity to Simulated Global Change.

Authors:  N C Scales; A B Chase; S S Finks; A A Malik; C Weihe; S D Allison; A C Martiny; J B H Martiny
Journal:  Appl Environ Microbiol       Date:  2022-02-02       Impact factor: 4.792

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