Literature DB >> 20226076

Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat.

Alexander Belyayev1, Ruslan Kalendar, Leonid Brodsky, Eviatar Nevo, Alan H Schulman, Olga Raskina.   

Abstract

BACKGROUND: How new forms arise in nature has engaged evolutionary biologists since Darwin's seminal treatise on the origin of species. Transposable elements (TEs) may be among the most important internal sources for intraspecific variability. Thus, we aimed to explore the temporal dynamics of several TEs in individual genotypes from a small, marginal population of Aegilops speltoides. A diploid cross-pollinated grass species, it is a wild relative of the various wheat species known for their large genome sizes contributed by an extraordinary number of TEs, particularly long terminal repeat (LTR) retrotransposons. The population is characterized by high heteromorphy and possesses a wide spectrum of chromosomal abnormalities including supernumerary chromosomes, heterozygosity for translocations, and variability in the chromosomal position or number of 45S and 5S ribosomal DNA (rDNA) sites. We propose that variability on the morphological and chromosomal levels may be linked to variability at the molecular level and particularly in TE proliferation.
RESULTS: Significant temporal fluctuation in the copy number of TEs was detected when processes that take place in small, marginal populations were simulated. It is known that under critical external conditions, outcrossing plants very often transit to self-pollination. Thus, three morphologically different genotypes with chromosomal aberrations were taken from a wild population of Ae. speltoides, and the dynamics of the TE complex traced through three rounds of selfing. It was discovered that: (i) various families of TEs vary tremendously in copy number between individuals from the same population and the selfed progenies; (ii) the fluctuations in copy number are TE-family specific; (iii) there is a great difference in TE copy number expansion or contraction between gametophytes and sporophytes; and (iv) a small percentage of TEs that increase in copy number can actually insert at novel locations and could serve as a bona fide mutagen.
CONCLUSIONS: We hypothesize that TE dynamics could promote or intensify morphological and karyotypical changes, some of which may be potentially important for the process of microevolution, and allow species with plastic genomes to survive as new forms or even species in times of rapid climatic change.

Entities:  

Year:  2010        PMID: 20226076      PMCID: PMC2836003          DOI: 10.1186/1759-8753-1-6

Source DB:  PubMed          Journal:  Mob DNA


  45 in total

1.  Chromosomal distribution of reverse transcriptase-containing retroelements in two Triticeae species.

Authors:  A Belyayev; O Raskina; E Nevo
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

2.  Transposable elements and host genome evolution.

Authors: 
Journal:  Trends Ecol Evol       Date:  2000-03       Impact factor: 17.712

3.  Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat.

Authors:  Khalil Kashkush; Moshe Feldman; Avraham A Levy
Journal:  Nat Genet       Date:  2002-12-16       Impact factor: 38.330

Review 4.  Family level inbreeding depression and the evolution of plant mating systems.

Authors:  John K Kelly
Journal:  New Phytol       Date:  2005-01       Impact factor: 10.151

5.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

Review 6.  Epigenetics and plant evolution.

Authors:  Ryan A Rapp; Jonathan F Wendel
Journal:  New Phytol       Date:  2005-10       Impact factor: 10.151

7.  Variability of the chromosomal distribution of Ty3-gypsy retrotransposons in the populations of two wild Triticeae species.

Authors:  A Belyayev; O Raskina; E Nevo
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

8.  Isolation and characterization of genome-specific DNA sequences in Triticeae species.

Authors:  K Anamthawat-Jónsson; J S Heslop-Harrison
Journal:  Mol Gen Genet       Date:  1993-08

9.  Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis.

Authors:  Katrien M Devos; James K M Brown; Jeffrey L Bennetzen
Journal:  Genome Res       Date:  2002-07       Impact factor: 9.043

10.  Activity of the En/Spm-like transposons in meiosis as a base for chromosome repatterning in a small, isolated, peripheral population of Aegilops speltoides Tausch.

Authors:  Olga Raskina; Alexander Belyayev; Eviatar Nevo
Journal:  Chromosome Res       Date:  2004       Impact factor: 4.620

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  30 in total

1.  Characterization of transcriptional activation and inserted-into-gene preference of various transposable elements in the Brassica species.

Authors:  Caihua Gao; Meili Xiao; Lingyan Jiang; Jiana Li; Jiaming Yin; Xiaodong Ren; Wei Qian; Ortegón Oscar; Donghui Fu; Zhanglin Tang
Journal:  Mol Biol Rep       Date:  2012-02-11       Impact factor: 2.316

2.  Genetic and epigenetic dynamics of a retrotransposon after allopolyploidization of wheat.

Authors:  Zina Kraitshtein; Beery Yaakov; Vadim Khasdan; Khalil Kashkush
Journal:  Genetics       Date:  2010-09-07       Impact factor: 4.562

3.  iPBS: a universal method for DNA fingerprinting and retrotransposon isolation.

Authors:  Ruslan Kalendar; Kristiina Antonius; Petr Smýkal; Alan H Schulman
Journal:  Theor Appl Genet       Date:  2010-07-10       Impact factor: 5.699

4.  Small RNA changes in synthetic Brassica napus.

Authors:  Ying Fu; Meili Xiao; Huasheng Yu; Annaliese S Mason; Jiaming Yin; Jiana Li; Dongqing Zhang; Donghui Fu
Journal:  Planta       Date:  2016-04-23       Impact factor: 4.116

5.  Retrotransposable Elements: DNA Fingerprinting and the Assessment of Genetic Diversity.

Authors:  Ruslan Kalendar; Alexander Muterko; Svetlana Boronnikova
Journal:  Methods Mol Biol       Date:  2021

6.  Intraspecific and intraorganismal copy number dynamics of retrotransposons and tandem repeat in Aegilops speltoides Tausch (Poaceae, Triticeae).

Authors:  Imad Shams; Olga Raskina
Journal:  Protoplasma       Date:  2018-01-27       Impact factor: 3.356

7.  Tandem repeats on an eco-geographical scale: outcomes from the genome of Aegilops speltoides.

Authors:  Olga Raskina; Leonid Brodsky; Alexander Belyayev
Journal:  Chromosome Res       Date:  2011-06-08       Impact factor: 5.239

8.  Diversity of long terminal repeat retrotransposon genome distribution in natural populations of the wild diploid wheat Aegilops speltoides.

Authors:  Elena Hosid; Leonid Brodsky; Ruslan Kalendar; Olga Raskina; Alexander Belyayev
Journal:  Genetics       Date:  2011-10-31       Impact factor: 4.562

9.  High-throughput retrotransposon-based genetic diversity of maize germplasm assessment and analysis.

Authors:  Marwa Ghonaim; Ruslan Kalendar; Hoda Barakat; Nahla Elsherif; Naglaa Ashry; Alan H Schulman
Journal:  Mol Biol Rep       Date:  2020-01-09       Impact factor: 2.316

10.  Chromosome evolution in marginal populations of Aegilops speltoides: causes and consequences.

Authors:  Alexander Belyayev; Olga Raskina
Journal:  Ann Bot       Date:  2013-02-07       Impact factor: 4.357

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