Literature DB >> 20223220

Structure of the GLD-1 homodimerization domain: insights into STAR protein-mediated translational regulation.

Christine Beuck1, Blair R Szymczyna, Donald E Kerkow, Andrew B Carmel, Linda Columbus, Robyn L Stanfield, James R Williamson.   

Abstract

Posttranscriptional regulation of gene expression is an important mechanism for modulating protein levels in eukaryotes, especially in developmental pathways. The highly conserved homodimeric STAR/GSG proteins play a key role in regulating translation by binding bipartite consensus sequences in the untranslated regions of target mRNAs, but the exact mechanism remains unknown. Structures of STAR protein RNA binding subdomains have been determined, but structural information is lacking for the homodimerization subdomain. Here, we present the structure of the C. elegans GLD-1 homodimerization domain dimer, determined by a combination of X-ray crystallography and NMR spectroscopy, revealing a helix-turn-helix monomeric fold with the two protomers stacked perpendicularly. Structure-based mutagenesis demonstrates that the dimer interface is not easily disrupted, but the structural integrity of the monomer is crucial for GLD-1 dimerization. Finally, an improved model for STAR-mediated translational regulation of mRNA, based on the GLD-1 homodimerization domain structure, is presented.

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Year:  2010        PMID: 20223220      PMCID: PMC2837851          DOI: 10.1016/j.str.2009.12.016

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  52 in total

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2.  Conservation of the C.elegans tra-2 3'UTR translational control.

Authors:  E Jan; J W Yoon; D Walterhouse; P Iannaccone; E B Goodwin
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3.  Solution structure and backbone dynamics of the KH-QUA2 region of the Xenopus STAR/GSG quaking protein.

Authors:  Mahon L Maguire; Gulin Guler-Gane; Daniel Nietlispach; Andrew R C Raine; Aaron M Zorn; Nancy Standart; R William Broadhurst
Journal:  J Mol Biol       Date:  2005-04-29       Impact factor: 5.469

4.  Self-association of the single-KH-domain family members Sam68, GRP33, GLD-1, and Qk1: role of the KH domain.

Authors:  T Chen; B B Damaj; C Herrera; P Lasko; S Richard
Journal:  Mol Cell Biol       Date:  1997-10       Impact factor: 4.272

Review 5.  Translational regulation in development.

Authors:  D Curtis; R Lehmann; P D Zamore
Journal:  Cell       Date:  1995-04-21       Impact factor: 41.582

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
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7.  Structural basis for recognition of the intron branch site RNA by splicing factor 1.

Authors:  Z Liu; I Luyten; M J Bottomley; A C Messias; S Houngninou-Molango; R Sprangers; K Zanier; A Krämer; M Sattler
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8.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

9.  Synergy of NMR, computation, and X-ray crystallography for structural biology.

Authors:  Blair R Szymczyna; Rebecca E Taurog; Mark J Young; Jamie C Snyder; John E Johnson; James R Williamson
Journal:  Structure       Date:  2009-04-15       Impact factor: 5.006

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  17 in total

1.  Get5 carboxyl-terminal domain is a novel dimerization motif that tethers an extended Get4/Get5 complex.

Authors:  Justin W Chartron; David G VanderVelde; Meera Rao; William M Clemons
Journal:  J Biol Chem       Date:  2012-01-17       Impact factor: 5.157

2.  Understanding the binding specificities of mRNA targets by the mammalian Quaking protein.

Authors:  Monika Sharma; Shakshi Sharma; Apoorv Alawada
Journal:  Nucleic Acids Res       Date:  2019-11-18       Impact factor: 16.971

3.  Structural basis for homodimerization of the Src-associated during mitosis, 68-kDa protein (Sam68) Qua1 domain.

Authors:  N Helge Meyer; Konstantinos Tripsianes; Michelle Vincendeau; Tobias Madl; Fatiha Kateb; Ruth Brack-Werner; Michael Sattler
Journal:  J Biol Chem       Date:  2010-07-06       Impact factor: 5.157

Review 4.  Causes and consequences of the evolution of reproductive mode in Caenorhabditis nematodes.

Authors:  Cristel G Thomas; Gavin C Woodruff; Eric S Haag
Journal:  Trends Genet       Date:  2012-04-03       Impact factor: 11.639

5.  Evolutionary Dynamics of GLD-1-mRNA complexes in Caenorhabditis nematodes.

Authors:  Alana V Beadell; Eric S Haag
Journal:  Genome Biol Evol       Date:  2014-12-09       Impact factor: 3.416

6.  Combining NMR and EPR methods for homodimer protein structure determination.

Authors:  Yunhuang Yang; Theresa A Ramelot; Robert M McCarrick; Shuisong Ni; Erik A Feldmann; John R Cort; Huang Wang; Colleen Ciccosanti; Mei Jiang; Haleema Janjua; Thomas B Acton; Rong Xiao; John K Everett; Gaetano T Montelione; Michael A Kennedy
Journal:  J Am Chem Soc       Date:  2010-09-01       Impact factor: 15.419

7.  Structural analysis of the quaking homodimerization interface.

Authors:  Christine Beuck; Song Qu; W Samuel Fagg; Manuel Ares; James R Williamson
Journal:  J Mol Biol       Date:  2012-09-11       Impact factor: 5.469

8.  Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites.

Authors:  Marianna Teplova; Markus Hafner; Dmitri Teplov; Katharina Essig; Thomas Tuschl; Dinshaw J Patel
Journal:  Genes Dev       Date:  2013-04-15       Impact factor: 11.361

9.  Sex-lethal promotes nuclear retention of msl2 mRNA via interactions with the STAR protein HOW.

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Journal:  Genes Dev       Date:  2013-06-15       Impact factor: 11.361

10.  Solution structure of the QUA1 dimerization domain of pXqua, the Xenopus ortholog of Quaking.

Authors:  Muzaffar Ali; R William Broadhurst
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240

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