Literature DB >> 20221911

Genomic databases and resources at the National Center for Biotechnology Information.

Tatiana Tatusova1.   

Abstract

The National Center for Biotechnology Information (NCBI), as a primary public repository of genomic sequence data, collects and maintains enormous amounts of heterogeneous data. Data for genomes, genes, gene expressions, gene variation, gene families, proteins, and protein domains are integrated with the analytical, search, and retrieval resources through the NCBI Web site. Entrez, a text-based search and retrieval system, provides a fast and easy way to navigate across diverse biological databases.Customized genomic BLAST enables sequence similarity searches against a special collection of organism-specific sequence data and viewing the resulting alignments within a genomic context using NCBI's genome browser, Map Viewer.Comparative genome analysis tools lead to further understanding of evolutionary processes, quickening the pace of discovery.

Mesh:

Year:  2010        PMID: 20221911     DOI: 10.1007/978-1-60327-241-4_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Diversity of CD2 subfamily receptors in cyprinid fishes.

Authors:  Shiro Sameshima; Miki Nakao; Tomonori Somamoto
Journal:  Results Immunol       Date:  2012-02-01

2.  Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages.

Authors:  Sebastiaan M Bol; Perry D Moerland; Sophie Limou; Yvonne van Remmerden; Cédric Coulonges; Daniëlle van Manen; Joshua T Herbeck; Jacques Fellay; Margit Sieberer; Jantine G Sietzema; Ruben van 't Slot; Jeremy Martinson; Jean-François Zagury; Hanneke Schuitemaker; Angélique B van 't Wout
Journal:  PLoS One       Date:  2011-02-25       Impact factor: 3.240

3.  PhenoHM: human-mouse comparative phenome-genome server.

Authors:  Divya Sardana; Suresh Vasa; Nishanth Vepachedu; Jing Chen; Ranga Chandra Gudivada; Bruce J Aronow; Anil G Jegga
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

4.  A nuclear single-nucleotide polymorphism (SNP) potentially useful for the separation of Rhodnius prolixus from members of the Rhodnius robustus cryptic species complex (Hemiptera: Reduviidae).

Authors:  Márcio G Pavan; Rafael D Mesquita; Gena G Lawrence; Cristiano Lazoski; Ellen M Dotson; Sahar Abubucker; Makedonka Mitreva; Jennifer Randall-Maher; Fernando A Monteiro
Journal:  Infect Genet Evol       Date:  2012-12-06       Impact factor: 3.342

5.  Using BioMart as a framework to manage and query pancreatic cancer data.

Authors:  Rosalind J Cutts; Emanuela Gadaleta; Nicholas R Lemoine; Claude Chelala
Journal:  Database (Oxford)       Date:  2011-06-11       Impact factor: 3.451

6.  The Pancreatic Expression database: 2011 update.

Authors:  Rosalind J Cutts; Emanuela Gadaleta; Stephan A Hahn; Tatjana Crnogorac-Jurcevic; Nicholas R Lemoine; Claude Chelala
Journal:  Nucleic Acids Res       Date:  2010-10-18       Impact factor: 16.971

7.  MiR-34a expression has an effect for lower risk of metastasis and associates with expression patterns predicting clinical outcome in breast cancer.

Authors:  Hanna Peurala; Dario Greco; Tuomas Heikkinen; Sippy Kaur; Jirina Bartkova; Maral Jamshidi; Kristiina Aittomäki; Päivi Heikkilä; Jiri Bartek; Carl Blomqvist; Ralf Bützow; Heli Nevanlinna
Journal:  PLoS One       Date:  2011-11-10       Impact factor: 3.240

8.  HaloWeb: the haloarchaeal genomes database.

Authors:  Satyajit L Dassarma; Melinda D Capes; Priya Dassarma; Shiladitya Dassarma
Journal:  Saline Syst       Date:  2010-12-30

Review 9.  Machine learning approaches and databases for prediction of drug-target interaction: a survey paper.

Authors:  Maryam Bagherian; Elyas Sabeti; Kai Wang; Maureen A Sartor; Zaneta Nikolovska-Coleska; Kayvan Najarian
Journal:  Brief Bioinform       Date:  2021-01-18       Impact factor: 11.622

  9 in total

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