Literature DB >> 20220757

A computational model of teeth and the developmental origins of morphological variation.

Isaac Salazar-Ciudad1, Jukka Jernvall.   

Abstract

The relationship between the genotype and the phenotype, or the genotype-phenotype map, is generally approached with the tools of multivariate quantitative genetics and morphometrics. Whereas studies of development and mathematical models of development may offer new insights into the genotype-phenotype map, the challenge is to make them useful at the level of microevolution. Here we report a computational model of mammalian tooth development that combines parameters of genetic and cellular interactions to produce a three-dimensional tooth from a simple tooth primordia. We systematically tinkered with each of the model parameters to generate phenotypic variation and used geometric morphometric analyses to identify, or developmentally ordinate, parameters best explaining population-level variation of real teeth. To model the full range of developmentally possible morphologies, we used a population sample of ringed seals (Phoca hispida ladogensis). Seal dentitions show a high degree of variation, typically linked to the lack of exact occlusion. Our model suggests that despite the complexity of development and teeth, there may be a simple basis for dental variation. Changes in single parameters regulating signalling during cusp development may explain shape variation among individuals, whereas a parameter regulating epithelial growth may explain serial, tooth-to-tooth variation along the jaw. Our study provides a step towards integrating the genotype, development and the phenotype.

Entities:  

Mesh:

Year:  2010        PMID: 20220757     DOI: 10.1038/nature08838

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  28 in total

1.  Linking development with generation of novelty in mammalian teeth.

Authors:  J Jernvall
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

2.  Gene networks capable of pattern formation: from induction to reaction-diffusion.

Authors:  I Salazar-Ciudad; J Garcia-Fernández; R V Solé
Journal:  J Theor Biol       Date:  2000-08-21       Impact factor: 2.691

3.  Dynamic control of positional information in the early Drosophila embryo.

Authors:  Johannes Jaeger; Svetlana Surkova; Maxim Blagov; Hilde Janssens; David Kosman; Konstantin N Kozlov; Ekaterina Myasnikova; Carlos E Vanario-Alonso; Maria Samsonova; David H Sharp; John Reinitz
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

4.  Emerging principles of regulatory evolution.

Authors:  Benjamin Prud'homme; Nicolas Gompel; Sean B Carroll
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

5.  A model of growth restraints to explain the development and evolution of tooth shapes in mammals.

Authors:  Jeffrey W Osborn
Journal:  J Theor Biol       Date:  2008-09-18       Impact factor: 2.691

6.  The dynamics of developmental system drift in the gene network underlying wing polyphenism in ants: a mathematical model.

Authors:  Marcos Nahmad; Leon Glass; Ehab Abouheif
Journal:  Evol Dev       Date:  2008 May-Jun       Impact factor: 1.930

7.  Regulation of mammalian tooth cusp patterning by ectodin.

Authors:  Yoshiaki Kassai; Pauliina Munne; Yuhei Hotta; Enni Penttilä; Kathryn Kavanagh; Norihiko Ohbayashi; Shinji Takada; Irma Thesleff; Jukka Jernvall; Nobuyuki Itoh
Journal:  Science       Date:  2005-09-23       Impact factor: 47.728

8.  Predicting evolutionary patterns of mammalian teeth from development.

Authors:  Kathryn D Kavanagh; Alistair R Evans; Jukka Jernvall
Journal:  Nature       Date:  2007-09-27       Impact factor: 49.962

9.  Morphological evolution through multiple cis-regulatory mutations at a single gene.

Authors:  Alistair P McGregor; Virginie Orgogozo; Isabelle Delon; Jennifer Zanet; Dayalan G Srinivasan; François Payre; David L Stern
Journal:  Nature       Date:  2007-07-15       Impact factor: 49.962

10.  cis-Regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans.

Authors:  Craig T Miller; Sandra Beleza; Alex A Pollen; Dolph Schluter; Rick A Kittles; Mark D Shriver; David M Kingsley
Journal:  Cell       Date:  2007-12-14       Impact factor: 41.582

View more
  83 in total

1.  Algorithms to automatically quantify the geometric similarity of anatomical surfaces.

Authors:  Doug M Boyer; Yaron Lipman; Elizabeth St Clair; Jesus Puente; Biren A Patel; Thomas Funkhouser; Jukka Jernvall; Ingrid Daubechies
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

2.  Tooth development in a model reptile: functional and null generation teeth in the gecko Paroedura picta.

Authors:  Oldrich Zahradnicek; Ivan Horacek; Abigail S Tucker
Journal:  J Anat       Date:  2012-07-11       Impact factor: 2.610

3.  The presence of accessory cusps in chimpanzee lower molars is consistent with a patterning cascade model of development.

Authors:  Matthew M Skinner; Philipp Gunz
Journal:  J Anat       Date:  2010-07-12       Impact factor: 2.610

Review 4.  Phenomics: the next challenge.

Authors:  David Houle; Diddahally R Govindaraju; Stig Omholt
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

5.  On the growth and form of the gut.

Authors:  Thierry Savin; Natasza A Kurpios; Amy E Shyer; Patricia Florescu; Haiyi Liang; L Mahadevan; Clifford J Tabin
Journal:  Nature       Date:  2011-08-03       Impact factor: 49.962

6.  High-throughput mathematical analysis identifies Turing networks for patterning with equally diffusing signals.

Authors:  Luciano Marcon; Xavier Diego; James Sharpe; Patrick Müller
Journal:  Elife       Date:  2016-04-08       Impact factor: 8.140

7.  A systems biology representation of developmental anatomy.

Authors:  Jonathan Bard
Journal:  J Anat       Date:  2011-04-05       Impact factor: 2.610

Review 8.  Gene networks, occlusal clocks, and functional patches: new understanding of pattern and process in the evolution of the dentition.

Authors:  P David Polly
Journal:  Odontology       Date:  2015-05-19       Impact factor: 2.634

9.  Manipulation of Fgf and Bmp signaling in teleost fishes suggests potential pathways for the evolutionary origin of multicuspid teeth.

Authors:  William R Jackman; Shelby H Davies; David B Lyons; Caitlin K Stauder; Benjamin R Denton-Schneider; Andrea Jowdry; Sharon R Aigler; Scott A Vogel; David W Stock
Journal:  Evol Dev       Date:  2013 Mar-Apr       Impact factor: 1.930

10.  Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche.

Authors:  Eugenio Azpeitia; Mariana Benítez; Iliusi Vega; Carlos Villarreal; Elena R Alvarez-Buylla
Journal:  BMC Syst Biol       Date:  2010-10-05
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.