Literature DB >> 20220148

Structural evidence for a dehydrated intermediate in green fluorescent protein chromophore biosynthesis.

Nadya V Pletneva1, Vladimir Z Pletnev, Konstantin A Lukyanov, Nadya G Gurskaya, Ekaterina A Goryacheva, Vladimir I Martynov, Alexander Wlodawer, Zbigniew Dauter, Sergei Pletnev.   

Abstract

The acGFPL is the first-identified member of a novel, colorless and non-fluorescent group of green fluorescent protein (GFP)-like proteins. Its mutant aceGFP, with Gly replacing the invariant catalytic Glu-222, demonstrates a relatively fast maturation rate and bright green fluorescence (lambda(ex) = 480 nm, lambda(em) = 505 nm). The reverse G222E single mutation in aceGFP results in the immature, colorless variant aceGFP-G222E, which undergoes irreversible photoconversion to a green fluorescent state under UV light exposure. Here we present a high resolution crystallographic study of aceGFP and aceGFP-G222E in the immature and UV-photoconverted states. A unique and striking feature of the colorless aceGFP-G222E structure is the chromophore in the trapped intermediate state, where cyclization of the protein backbone has occurred, but Tyr-66 still stays in the native, non-oxidized form, with C(alpha) and C(beta) atoms in the sp(3) hybridization. This experimentally observed immature aceGFP-G222E structure, characterized by the non-coplanar arrangement of the imidazolone and phenolic rings, has been attributed to one of the intermediate states in the GFP chromophore biosynthesis. The UV irradiation (lambda = 250-300 nm) of aceGFP-G222E drives the chromophore maturation further to a green fluorescent state, characterized by the conventional coplanar bicyclic structure with the oxidized double Tyr-66 C(alpha)=C(beta) bond and the conjugated system of pi-electrons. Structure-based site-directed mutagenesis has revealed a critical role of the proximal Tyr-220 in the observed effects. In particular, an alternative reaction pathway via Tyr-220 rather than conventional wild type Glu-222 has been proposed for aceGFP maturation.

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Year:  2010        PMID: 20220148      PMCID: PMC2871466          DOI: 10.1074/jbc.M109.092320

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

1.  Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures.

Authors:  David P Barondeau; Christopher D Putnam; Carey J Kassmann; John A Tainer; Elizabeth D Getzoff
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-01       Impact factor: 11.205

2.  A photoactivatable GFP for selective photolabeling of proteins and cells.

Authors:  George H Patterson; Jennifer Lippincott-Schwartz
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

3.  The CCP4 suite: programs for protein crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

4.  The crystal structure of the Y66L variant of green fluorescent protein supports a cyclization-oxidation-dehydration mechanism for chromophore maturation.

Authors:  Matthew A Rosenow; Holly A Huffman; Marlene E Phail; Rebekka M Wachter
Journal:  Biochemistry       Date:  2004-04-20       Impact factor: 3.162

Review 5.  The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins.

Authors:  Vladislav V Verkhusha; Konstantin A Lukyanov
Journal:  Nat Biotechnol       Date:  2004-03       Impact factor: 54.908

6.  The 2.2 A crystal structure of a pocilloporin pigment reveals a nonplanar chromophore conformation.

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Journal:  Structure       Date:  2003-03       Impact factor: 5.006

7.  GFP-like chromoproteins as a source of far-red fluorescent proteins.

Authors:  N G Gurskaya; A F Fradkov; A Terskikh; M V Matz; Y A Labas; V I Martynov; Y G Yanushevich; K A Lukyanov; S A Lukyanov
Journal:  FEBS Lett       Date:  2001-10-19       Impact factor: 4.124

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Authors:  Jasper J van Thor; Thomas Gensch; Klaas J Hellingwerf; Louise N Johnson
Journal:  Nat Struct Biol       Date:  2002-01

9.  A colourless green fluorescent protein homologue from the non-fluorescent hydromedusa Aequorea coerulescens and its fluorescent mutants.

Authors:  Nadya G Gurskaya; Arkady F Fradkov; Natalia I Pounkova; Dmitry B Staroverov; Maria E Bulina; Yurii G Yanushevich; Yulii A Labas; Sergey Lukyanov; Konstantin A Lukyanov
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10.  Interconversion of Anthozoa GFP-like fluorescent and non-fluorescent proteins by mutagenesis.

Authors:  Maria E Bulina; Dmitry M Chudakov; Nikolay N Mudrik; Konstantin A Lukyanov
Journal:  BMC Biochem       Date:  2002-04-24       Impact factor: 4.059

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  9 in total

1.  A conserved interaction with the chromophore of fluorescent proteins.

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Journal:  Protein Sci       Date:  2011-12-21       Impact factor: 6.725

2.  The influence of chromophore-protein interactions on spectroscopic properties of the yellow fluorescent protein.

Authors:  A A Pakhomov; S A Tretyakova; V I Martynov
Journal:  Dokl Biochem Biophys       Date:  2012-09-02       Impact factor: 0.788

3.  Signal Discrimination Between Fluorescent Proteins in Live Cells by Long-wavelength Optical Modulation.

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4.  Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.

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5.  A novel violet fluorescent protein contains a unique oxidized tyrosine as the simplest chromophore ever reported in fluorescent proteins.

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6.  Co-production of GroELS discriminates between intrinsic and thermally-induced recombinant protein aggregation during substrate quality control.

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7.  Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs.

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8.  Investigating Synthesis of the MalS Malic Enzyme during Bacillus subtilis Spore Germination and Outgrowth and the Influence of Spore Maturation and Sporulation Conditions.

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9.  Influence of the First Chromophore-Forming Residue on Photobleaching and Oxidative Photoconversion of EGFP and EYFP.

Authors:  Tirthendu Sen; Anastasia V Mamontova; Anastasia V Titelmayer; Aleksander M Shakhov; Artyom A Astafiev; Atanu Acharya; Konstantin A Lukyanov; Anna I Krylov; Alexey M Bogdanov
Journal:  Int J Mol Sci       Date:  2019-10-22       Impact factor: 5.923

  9 in total

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