Literature DB >> 20219921

5' to 3' mRNA decay factors colocalize with Ty1 gag and human APOBEC3G and promote Ty1 retrotransposition.

James A Dutko1, Alison E Kenny, Eric R Gamache, M Joan Curcio.   

Abstract

The genomic RNA of retroviruses and retrovirus-like transposons must be sequestered from the cellular translational machinery so that it can be packaged into viral particles. Eukaryotic mRNA processing bodies (P bodies) play a central role in segregating cellular mRNAs from the translational machinery for storage or decay. In this work, we provide evidence that the RNA of the Saccharomyces cerevisiae Ty1 retrotransposon is packaged into virus-like particles (VLPs) in P bodies. Ty1 RNA is translationally repressed, and Ty1 Gag, the capsid and RNA binding protein, accumulates in discrete cytoplasmic foci, a subset of which localize to P bodies. Human APOBEC3G, a potent Ty1 restriction factor that is packaged into Ty1 VLPs via an interaction with Gag, also localizes to P bodies. The association of APOBEC3G with P bodies does not require Ty1 element expression, suggesting that P-body localization of APOBEC3G and Ty1 Gag precedes VLP assembly. Additionally, we report that two P-body-associated 5' to 3' mRNA decay pathways, deadenylation-dependent mRNA decay (DDD) and nonsense-mediated decay (NMD), stimulate Ty1 retrotransposition. The additive contributions of DDD and NMD explain the strong requirement for general 5' to 3' mRNA degradation factors Dcp1, Dcp2, and Xrn1 in Ty1 retromobility. 5' to 3' decay factors act at a posttranslational step in retrotransposition, and Ty1 RNA packaging into VLPs is abolished in the absence of the 5' to 3' exonuclease Xrn1. Together, the results suggest that VLPs assemble in P bodies and that 5' to 3' mRNA decay is essential for the packaging of Ty1 RNA in VLPs.

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Year:  2010        PMID: 20219921      PMCID: PMC2863804          DOI: 10.1128/JVI.02477-09

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  87 in total

1.  Ty3 nucleocapsid controls localization of particle assembly.

Authors:  Liza S Z Larsen; Nadejda Beliakova-Bethell; Virginia Bilanchone; Min Zhang; Anne Lamsa; Rhonda Dasilva; G Wesley Hatfield; Kunio Nagashima; Suzanne Sandmeyer
Journal:  J Virol       Date:  2007-12-19       Impact factor: 5.103

2.  Unexpected roles for UPF1 in HIV-1 RNA metabolism and translation.

Authors:  Lara Ajamian; Levon Abrahamyan; Miroslav Milev; Pavel V Ivanov; Andreas E Kulozik; Niels H Gehring; Andrew J Mouland
Journal:  RNA       Date:  2008-03-27       Impact factor: 4.942

3.  The T body, a new cytoplasmic RNA granule in Saccharomyces cerevisiae.

Authors:  Francisco Malagon; Torben Heick Jensen
Journal:  Mol Cell Biol       Date:  2008-08-04       Impact factor: 4.272

4.  The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies.

Authors:  Carla Beckham; Angela Hilliker; Anne-Marie Cziko; Amine Noueiry; Mani Ramaswami; Roy Parker
Journal:  Mol Biol Cell       Date:  2007-12-27       Impact factor: 4.138

5.  Retrosequence formation restructures the yeast genome.

Authors:  Patrick H Maxwell; M Joan Curcio
Journal:  Genes Dev       Date:  2007-12-15       Impact factor: 11.361

6.  A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae.

Authors:  Julia Berretta; Marina Pinskaya; Antonin Morillon
Journal:  Genes Dev       Date:  2008-03-01       Impact factor: 11.361

7.  The DNA deaminase activity of human APOBEC3G is required for Ty1, MusD, and human immunodeficiency virus type 1 restriction.

Authors:  April J Schumacher; Guylaine Haché; Donna A Macduff; William L Brown; Reuben S Harris
Journal:  J Virol       Date:  2008-01-09       Impact factor: 5.103

Review 8.  P bodies, stress granules, and viral life cycles.

Authors:  Carla J Beckham; Roy Parker
Journal:  Cell Host Microbe       Date:  2008-04-17       Impact factor: 21.023

9.  Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae.

Authors:  Carolyn J Decker; Daniela Teixeira; Roy Parker
Journal:  J Cell Biol       Date:  2007-11-05       Impact factor: 10.539

10.  Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies.

Authors:  Nathaniel P Hoyle; Lydia M Castelli; Susan G Campbell; Leah E A Holmes; Mark P Ashe
Journal:  J Cell Biol       Date:  2007-10-01       Impact factor: 10.539

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  43 in total

Review 1.  Function of a retrotransposon nucleocapsid protein.

Authors:  Suzanne B Sandmeyer; Kristina A Clemens
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

2.  Preferential retrotransposition in aging yeast mother cells is correlated with increased genome instability.

Authors:  Melissa N Patterson; Alison E Scannapieco; Pak Ho Au; Savanna Dorsey; Catherine A Royer; Patrick H Maxwell
Journal:  DNA Repair (Amst)       Date:  2015-08-07

3.  P bodies inhibit retrotransposition of endogenous intracisternal a particles.

Authors:  Chunye Lu; Xavier Contreras; B Matija Peterlin
Journal:  J Virol       Date:  2011-04-27       Impact factor: 5.103

4.  APOBEC3G complexes decrease human immunodeficiency virus type 1 production.

Authors:  Kenneth L Martin; Megan Johnson; Richard T D'Aquila
Journal:  J Virol       Date:  2011-07-13       Impact factor: 5.103

5.  Retrotransposon Ty1 RNA contains a 5'-terminal long-range pseudoknot required for efficient reverse transcription.

Authors:  Qing Huang; Katarzyna J Purzycka; Sabrina Lusvarghi; Donghui Li; Stuart F J Legrice; Jef D Boeke
Journal:  RNA       Date:  2013-01-17       Impact factor: 4.942

6.  HIV-1 replication and APOBEC3 antiviral activity are not regulated by P bodies.

Authors:  Prabhjeet K Phalora; Nathan M Sherer; Steven M Wolinsky; Chad M Swanson; Michael H Malim
Journal:  J Virol       Date:  2012-08-22       Impact factor: 5.103

7.  The Ty1 LTR-retrotransposon of budding yeast, Saccharomyces cerevisiae.

Authors:  M Joan Curcio; Sheila Lutz; Pascale Lesage
Journal:  Microbiol Spectr       Date:  2015-04-01

Review 8.  A self-encoded capsid derivative restricts Ty1 retrotransposition in Saccharomyces.

Authors:  David J Garfinkel; Jessica M Tucker; Agniva Saha; Yuri Nishida; Katarzyna Pachulska-Wieczorek; Leszek Błaszczyk; Katarzyna J Purzycka
Journal:  Curr Genet       Date:  2015-12-09       Impact factor: 3.886

9.  Characterization of LINE-1 ribonucleoprotein particles.

Authors:  Aurélien J Doucet; Amy E Hulme; Elodie Sahinovic; Deanna A Kulpa; John B Moldovan; Huira C Kopera; Jyoti N Athanikar; Manel Hasnaoui; Alain Bucheton; John V Moran; Nicolas Gilbert
Journal:  PLoS Genet       Date:  2010-10-07       Impact factor: 5.917

10.  Sequence requirements for localization and packaging of Ty3 retroelement RNA.

Authors:  Kristina Clemens; Virginia Bilanchone; Nadejda Beliakova-Bethell; Liza S Z Larsen; Kim Nguyen; Suzanne Sandmeyer
Journal:  Virus Res       Date:  2012-10-13       Impact factor: 3.303

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