Literature DB >> 25893143

The Ty1 LTR-retrotransposon of budding yeast, Saccharomyces cerevisiae.

M Joan Curcio1, Sheila Lutz1, Pascale Lesage2.   

Abstract

Long-terminal repeat (LTR)-retrotransposons generate a copy of their DNA (cDNA) by reverse transcription of their RNA genome in cytoplasmic nucleocapsids. They are widespread in the eukaryotic kingdom and are the evolutionary progenitors of retroviruses [1]. The Ty1 element of the budding yeast Saccharomyces cerevisiae was the first LTR-retrotransposon demonstrated to mobilize through an RNA intermediate, and not surprisingly, is the best studied. The depth of our knowledge of Ty1 biology stems not only from the predominance of active Ty1 elements in the S. cerevisiae genome but also the ease and breadth of genomic, biochemical and cell biology approaches available to study cellular processes in yeast. This review describes the basic structure of Ty1 and its gene products, the replication cycle, the rapidly expanding compendium of host co-factors known to influence retrotransposition and the nature of Ty1's elaborate symbiosis with its host. Our goal is to illuminate the value of Ty1 as a paradigm to explore the biology of LTR-retrotransposons in multicellular organisms, where the low frequency of retrotransposition events presents a formidable barrier to investigations of retrotransposon biology.

Entities:  

Year:  2015        PMID: 25893143      PMCID: PMC4399242          DOI: 10.1128/microbiolspec.MDNA3-0053-2014

Source DB:  PubMed          Journal:  Microbiol Spectr        ISSN: 2165-0497


  268 in total

Review 1.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

2.  BUD22 affects Ty1 retrotransposition and ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  Arun Dakshinamurthy; Katherine M Nyswaner; Philip J Farabaugh; David J Garfinkel
Journal:  Genetics       Date:  2010-05-24       Impact factor: 4.562

3.  Structural analysis of aberrant chromosomes that occur spontaneously in diploid Saccharomyces cerevisiae: retrotransposon Ty1 plays a crucial role in chromosomal rearrangements.

Authors:  Keiko Umezu; Mina Hiraoka; Masaaki Mori; Hisaji Maki
Journal:  Genetics       Date:  2002-01       Impact factor: 4.562

4.  Localization of sequences required in cis for yeast Ty1 element transposition near the long terminal repeats: analysis of mini-Ty1 elements.

Authors:  H Xu; J D Boeke
Journal:  Mol Cell Biol       Date:  1990-06       Impact factor: 4.272

5.  Cryo-electron microscopy structure of yeast Ty retrotransposon virus-like particles.

Authors:  K J Palmer; W Tichelaar; N Myers; N R Burns; S J Butcher; A J Kingsman; S D Fuller; H R Saibil
Journal:  J Virol       Date:  1997-09       Impact factor: 5.103

Review 6.  Protein folding and quality control in the endoplasmic reticulum: Recent lessons from yeast and mammalian cell systems.

Authors:  Jeffrey L Brodsky; William R Skach
Journal:  Curr Opin Cell Biol       Date:  2011-06-12       Impact factor: 8.382

7.  Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis.

Authors:  Katherine M Nyswaner; Mary Ann Checkley; Ming Yi; Robert M Stephens; David J Garfinkel
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

8.  Genetic evidence for a connection between Rous sarcoma virus gag nuclear trafficking and genomic RNA packaging.

Authors:  Rachel Garbitt-Hirst; Scott P Kenney; Leslie J Parent
Journal:  J Virol       Date:  2009-04-15       Impact factor: 5.103

9.  A genetic and structural study of genome rearrangements mediated by high copy repeat Ty1 elements.

Authors:  Jason E Chan; Richard D Kolodner
Journal:  PLoS Genet       Date:  2011-05-26       Impact factor: 5.917

10.  Acquisition of aneuploidy provides increased fitness during the evolution of antifungal drug resistance.

Authors:  Anna M Selmecki; Keely Dulmage; Leah E Cowen; James B Anderson; Judith Berman
Journal:  PLoS Genet       Date:  2009-10-30       Impact factor: 5.917

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  35 in total

1.  The spatial and temporal dynamics of nuclear RNAi-targeted retrotransposon transcripts in Caenorhabditis elegans.

Authors:  Julie Zhouli Ni; Natallia Kalinava; Sofia Galindo Mendoza; Sam Guoping Gu
Journal:  Development       Date:  2018-10-22       Impact factor: 6.868

2.  Reliance of Host-Encoded Regulators of Retromobility on Ty1 Promoter Activity or Architecture.

Authors:  Alicia C Salinero; Simey Emerson; Tayla C Cormier; John Yin; Randall H Morse; M Joan Curcio
Journal:  Front Mol Biosci       Date:  2022-07-01

3.  The effect of hybridization on transposable element accumulation in an undomesticated fungal species.

Authors:  Mathieu Hénault; Souhir Marsit; Guillaume Charron; Christian R Landry
Journal:  Elife       Date:  2020-09-21       Impact factor: 8.140

Review 4.  A self-encoded capsid derivative restricts Ty1 retrotransposition in Saccharomyces.

Authors:  David J Garfinkel; Jessica M Tucker; Agniva Saha; Yuri Nishida; Katarzyna Pachulska-Wieczorek; Leszek Błaszczyk; Katarzyna J Purzycka
Journal:  Curr Genet       Date:  2015-12-09       Impact factor: 3.886

5.  Ty1 Integrase Interacts with RNA Polymerase III-specific Subcomplexes to Promote Insertion of Ty1 Elements Upstream of Polymerase (Pol) III-transcribed Genes.

Authors:  Stephanie Cheung; Lina Ma; Patrick H W Chan; Hui-Lan Hu; Thibault Mayor; Hung-Ta Chen; Vivien Measday
Journal:  J Biol Chem       Date:  2016-01-21       Impact factor: 5.157

6.  Characterizing the functions of Ty1 Gag and the Gag-derived restriction factor p22/p18.

Authors:  Katarzyna Pachulska-Wieczorek; Leszek Błaszczyk; Julita Gumna; Yuri Nishida; Agniva Saha; Marcin Biesiada; David J Garfinkel; Katarzyna J Purzycka
Journal:  Mob Genet Elements       Date:  2016-03-07

7.  The Hsp90 Molecular Chaperone Regulates the Transcription Factor Network Controlling Chromatin Accessibility.

Authors:  Zlata Gvozdenov; Lindsey D Bendix; Janhavi Kolhe; Brian C Freeman
Journal:  J Mol Biol       Date:  2019-10-16       Impact factor: 5.469

8.  Ty1 retrovirus-like element Gag contains overlapping restriction factor and nucleic acid chaperone functions.

Authors:  Yuri Nishida; Katarzyna Pachulska-Wieczorek; Leszek Błaszczyk; Agniva Saha; Julita Gumna; David J Garfinkel; Katarzyna J Purzycka
Journal:  Nucleic Acids Res       Date:  2015-07-08       Impact factor: 16.971

9.  Genome stability is guarded by yeast Rtt105 through multiple mechanisms.

Authors:  Yves Corda; Laetitia Maestroni; Pierre Luciano; Maria Y Najem; Vincent Géli
Journal:  Genetics       Date:  2021-02-09       Impact factor: 4.562

10.  The Ty1 Retrotransposon Restriction Factor p22 Targets Gag.

Authors:  Jessica M Tucker; Morgan E Larango; Lucas P Wachsmuth; Natarajan Kannan; David J Garfinkel
Journal:  PLoS Genet       Date:  2015-10-09       Impact factor: 5.917

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