Literature DB >> 20219692

Involvement of transposon-like elements in penicillin gene cluster regulation.

Mona Shaaban1, Jonathan M Palmer, Wael A El-Naggar, M A El-Sokkary, El-Sayed E Habib, Nancy P Keller.   

Abstract

Subtelomeric secondary metabolite (SM) gene clusters are frequently surrounded by DNA repeats and transposon-like elements. The Aspergillus nidulans penicillin cluster, 30kb from the telomere of chromosome VI, is bordered by such elements. Deletions of penicillin telomere proximal and distal border regions resulted in decreased penicillin production. A 3.7kb distal region called PbIa, consisting of the putative transposable element DNA-2, was examined further where its replacement by a pyrG marker presented a similar phenotype as loss of the global SM regulator LaeA, resulting in a decrease in penicillin gene expression and product formation. In contrast, placement of the pyrG marker on either side of PbIa had no effect on penicillin synthesis. A requirement for PbIa in penicillin production was also apparent in a histone deacetylase mutant, DeltahdaA, enhanced for penicillin production. Trans-complementation of the PbIa element near and within the terrequinone A cluster on chromosome V did not restore penicillin biosynthesis or increase production of terrequinone A. Taken together, this data provides evidence for transposon involvement in SM cluster regulation. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20219692      PMCID: PMC2863007          DOI: 10.1016/j.fgb.2010.02.006

Source DB:  PubMed          Journal:  Fungal Genet Biol        ISSN: 1087-1845            Impact factor:   3.495


  35 in total

1.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  The expression of sterigmatocystin and penicillin genes in Aspergillus nidulans is controlled by veA, a gene required for sexual development.

Authors:  Naoki Kato; Wilhelmina Brooks; Ana M Calvo
Journal:  Eukaryot Cell       Date:  2003-12

3.  LaeA, a regulator of secondary metabolism in Aspergillus spp.

Authors:  Jin Woo Bok; Nancy P Keller
Journal:  Eukaryot Cell       Date:  2004-04

4.  Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi.

Authors:  Jae-Hyuk Yu; Zsuzsanna Hamari; Kap-Hoon Han; Jeong-Ah Seo; Yazmid Reyes-Domínguez; Claudio Scazzocchio
Journal:  Fungal Genet Biol       Date:  2004-11       Impact factor: 3.495

5.  Genetic involvement of a cAMP-dependent protein kinase in a G protein signaling pathway regulating morphological and chemical transitions in Aspergillus nidulans.

Authors:  K Shimizu; N P Keller
Journal:  Genetics       Date:  2001-02       Impact factor: 4.562

6.  Chromatin-level regulation of biosynthetic gene clusters.

Authors:  Jin Woo Bok; Yi-Ming Chiang; Edyta Szewczyk; Yazmid Reyes-Dominguez; Ashley D Davidson; James F Sanchez; Hsien-Chun Lo; Kenji Watanabe; Joseph Strauss; Berl R Oakley; Clay C C Wang; Nancy P Keller
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

7.  veA is required for toxin and sclerotial production in Aspergillus parasiticus.

Authors:  Ana M Calvo; Jinwoo Bok; Wilhelmina Brooks; Nancy P Keller
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

8.  MATE transposable elements in Aspergillus nidulans: evidence of repeat-induced point mutation.

Authors:  A John Clutterbuck
Journal:  Fungal Genet Biol       Date:  2004-03       Impact factor: 3.495

9.  Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases.

Authors:  Daniel Robyr; Yuko Suka; Ioannis Xenarios; Siavash K Kurdistani; Amy Wang; Noriyuki Suka; Michael Grunstein
Journal:  Cell       Date:  2002-05-17       Impact factor: 41.582

10.  Virulence-related surface glycoproteins in the yeast pathogen Candida glabrata are encoded in subtelomeric clusters and subject to RAP1- and SIR-dependent transcriptional silencing.

Authors:  Alejandro De Las Peñas; Shih-Jung Pan; Irene Castaño; Jonathan Alder; Robert Cregg; Brendan P Cormack
Journal:  Genes Dev       Date:  2003-09-02       Impact factor: 11.361

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  25 in total

Review 1.  Secondary metabolism in fungi: does chromosomal location matter?

Authors:  Jonathan M Palmer; Nancy P Keller
Journal:  Curr Opin Microbiol       Date:  2010-06-02       Impact factor: 7.934

2.  Overexpression of the Aspergillus nidulans histone 4 acetyltransferase EsaA increases activation of secondary metabolite production.

Authors:  Alexandra A Soukup; Yi-Ming Chiang; Jin Woo Bok; Yazmid Reyes-Dominguez; Berl R Oakley; Clay C C Wang; Joseph Strauss; Nancy P Keller
Journal:  Mol Microbiol       Date:  2012-08-27       Impact factor: 3.501

3.  Botcinic acid biosynthesis in Botrytis cinerea relies on a subtelomeric gene cluster surrounded by relics of transposons and is regulated by the Zn2Cys6 transcription factor BcBoa13.

Authors:  Antoine Porquier; Javier Moraga; Guillaume Morgant; Bérengère Dalmais; Adeline Simon; Hind Sghyer; Isidro G Collado; Muriel Viaud
Journal:  Curr Genet       Date:  2019-03-08       Impact factor: 3.886

Review 4.  Regulation of secondary metabolism by chromatin structure and epigenetic codes.

Authors:  Joseph Strauss; Yazmid Reyes-Dominguez
Journal:  Fungal Genet Biol       Date:  2010-07-24       Impact factor: 3.495

5.  cpsA regulates mycotoxin production, morphogenesis and cell wall biosynthesis in the fungus Aspergillus nidulans.

Authors:  Xuehuan Feng; Vellaisamy Ramamoorthy; Sandesh S Pandit; Alicia Prieto; Eduardo A Espeso; Ana M Calvo
Journal:  Mol Microbiol       Date:  2017-04-24       Impact factor: 3.501

6.  veA-dependent RNA-pol II transcription elongation factor-like protein, RtfA, is associated with secondary metabolism and morphological development in Aspergillus nidulans.

Authors:  Vellaisamy Ramamoorthy; Sourabha Shantappa; Sourabh Dhingra; Ana M Calvo
Journal:  Mol Microbiol       Date:  2012-07-12       Impact factor: 3.501

7.  A novel automethylation reaction in the Aspergillus nidulans LaeA protein generates S-methylmethionine.

Authors:  Alexander N Patananan; Jonathan M Palmer; Graeme S Garvey; Nancy P Keller; Steven G Clarke
Journal:  J Biol Chem       Date:  2013-03-26       Impact factor: 5.157

Review 8.  Variability of chromosome structure in pathogenic fungi--of 'ends and odds'.

Authors:  Jonathan M Galazka; Michael Freitag
Journal:  Curr Opin Microbiol       Date:  2014-05-16       Impact factor: 7.934

Review 9.  The chromatin code of fungal secondary metabolite gene clusters.

Authors:  Agnieszka Gacek; Joseph Strauss
Journal:  Appl Microbiol Biotechnol       Date:  2012-07-20       Impact factor: 4.813

10.  Secondary metabolism and development is mediated by LlmF control of VeA subcellular localization in Aspergillus nidulans.

Authors:  Jonathan M Palmer; Jeffrey M Theisen; Rocio M Duran; W Scott Grayburn; Ana M Calvo; Nancy P Keller
Journal:  PLoS Genet       Date:  2013-01-17       Impact factor: 5.917

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