Literature DB >> 20215022

Assembly of a large Y-STR haplotype database for the Czech population and investigation of its substructure.

Jan Zastera1, Lutz Roewer, Sascha Willuweit, Patrik Sekerka, Lucie Benesova, Marek Minarik.   

Abstract

Twelve Y-chromosomal short tandem repeats (Y-STR) (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385a, DYS385b, DYS437, DYS438, and DYS439) included in the PowerPlex Y Kit (Promega Corporation, Madison, USA) were studied for 1750 unrelated males living in 14 regions of the Czech Republic. A total of 1148 different haplotypes were found. The overall haplotype diversity (HD) was determined as 0.998. Analysis of Molecular Variance (AMOVA) reveals non-significant distances between regions concerning their haplotype distribution, thus allowing to use the whole sample as a representative reference database of the Czech Republic. Median network analysis shows a remarkable bipartite composition of the Czech haplotypes, falling in distinct clusters with Eastern and Western European roots. Copyright 2009 Elsevier Ireland Ltd. All rights reserved.

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Year:  2010        PMID： 20215022     DOI： 10.1016/j.fsigen.2009.06.005

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN： 1872-4973            Impact factor:   4.882


  7 in total

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2.  Y-STR variation in Albanian populations: implications on the match probabilities and the genetic legacy of the minority claiming an Egyptian descent.

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Review 3.  Phylogeographic review of Y chromosome haplogroups in Europe.

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Journal:  Int J Legal Med       Date:  2021-07-03       Impact factor: 2.686

4.  Croatian national reference Y-STR haplotype database.

Authors:  Gordan Mršić; Branka Gršković; Andro Vrdoljak; Maja Popović; Ivica Valpotić; Šimun Anđelinović; Vlastimil Stenzl; Edvard Ehler; Ludvik Urban; Gordana Lacković; Peter Underhill; Dragan Primorac
Journal:  Mol Biol Rep       Date:  2012-03-06       Impact factor: 2.316

5.  Polymorphisms in CTNNBL1 in relation to colorectal cancer with evolutionary implications.

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Journal:  Int J Mol Epidemiol Genet       Date:  2010-11-25

6.  Y-chromosomal diversity of the Valachs from the Czech Republic: model for isolated population in Central Europe.

Authors:  Edvard Ehler; Daniel Vane; Vlastimil Stenzl; Václav Vancata
Journal:  Croat Med J       Date:  2011-06       Impact factor: 1.351

7.  Y-Chromosome Genetic Analysis of Modern Polish Population.

Authors:  Łukasz Grochowalski; Justyna Jarczak; Maria Urbanowicz; Marcin Słomka; Maria Szargut; Paulina Borówka; Marta Sobalska-Kwapis; Błażej Marciniak; Andrzej Ossowski; Wiesław Lorkiewicz; Dominik Strapagiel
Journal:  Front Genet       Date:  2020-10-23       Impact factor: 4.599
  7 in total

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