Literature DB >> 20211743

Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results.

Marcin Górniak1, Ovidiu Paun, Mark W Chase.   

Abstract

Using parsimony and Bayesian analyses, we estimated higher-level relationships within Orchidaceae, focusing on subfamilies and tribes. DNA sequences of part of the low-copy nuclear protein gene Xdh were obtained for 154 taxa including 126 genera of Orchidaceae and outgroup families of Asparagales. The general topology of the Xdh trees is congruent with those published previously based on plastid protein-coding genes and non-coding nuclear ribosomal DNA. The five subfamilies previously recognized are monophyletic and well supported. The results indicate that monandrous condition evolved independently in Vanilloideae and Epidendroideae/Orchidoideae. The analysis clarifies relationships between tribes of Epidendroideae such as Vandeae sensu lato to Collabieae, Epidendreae to Calypsoeae and Malaxideae to Dendrobieae. Also relationships of Bromheadia, Imerinaea, Sirhookera, and achlorophyllous species of Corallorhiza, Gastrodia, Limodorum, Neottia, Wullschlaegelia are for the first time evaluated in a broad molecular phylogenetic framework. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20211743     DOI: 10.1016/j.ympev.2010.03.003

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  32 in total

1.  Orchid phylogenomics and multiple drivers of their extraordinary diversification.

Authors:  Thomas J Givnish; Daniel Spalink; Mercedes Ames; Stephanie P Lyon; Steven J Hunter; Alejandro Zuluaga; William J D Iles; Mark A Clements; Mary T K Arroyo; James Leebens-Mack; Lorena Endara; Ricardo Kriebel; Kurt M Neubig; W Mark Whitten; Norris H Williams; Kenneth M Cameron
Journal:  Proc Biol Sci       Date:  2015-09-07       Impact factor: 5.349

Review 2.  Development and evolution of extreme synorganization in angiosperm flowers and diversity: a comparison of Apocynaceae and Orchidaceae.

Authors:  Peter K Endress
Journal:  Ann Bot       Date:  2015-08-20       Impact factor: 4.357

3.  Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

Authors:  Craig F Barrett; Chelsea D Specht; Jim Leebens-Mack; Dennis Wm Stevenson; Wendy B Zomlefer; Jerrold I Davis
Journal:  Ann Bot       Date:  2013-11-25       Impact factor: 4.357

4.  Expression pattern of two paralogs of the PI/GLO-like locus during Orchis italica (Orchidaceae, Orchidinae) flower development.

Authors:  Marinella Salemme; Maria Sica; Luciano Gaudio; Serena Aceto
Journal:  Dev Genes Evol       Date:  2011-09-04       Impact factor: 0.900

5.  Phylogenetic relationships in Epidendroideae (Orchidaceae), one of the great flowering plant radiations: progressive specialization and diversification.

Authors:  John V Freudenstein; Mark W Chase
Journal:  Ann Bot       Date:  2015-01-11       Impact factor: 4.357

6.  Evolution and biogeography of the slipper orchids: Eocene vicariance of the conduplicate genera in the Old and New World Tropics.

Authors:  Yan-Yan Guo; Yi-Bo Luo; Zhong-Jian Liu; Xiao-Quan Wang
Journal:  PLoS One       Date:  2012-06-07       Impact factor: 3.240

7.  The MADS and the Beauty: Genes Involved in the Development of Orchid Flowers.

Authors:  Serena Aceto; Luciano Gaudio
Journal:  Curr Genomics       Date:  2011-08       Impact factor: 2.236

8.  Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance.

Authors:  Zhong-Jian Liu; Li-Jun Chen; Sing-Chi Chen; Jing Cai; Wen-Chieh Tsai; Yu-Yun Hsiao; Wen-Hui Rao; Xue-Yong Ma; Guo-Qiang Zhang
Journal:  PLoS One       Date:  2011-10-10       Impact factor: 3.240

9.  Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids.

Authors:  Yu-Yun Hsiao; Yun-Wen Chen; Shi-Ching Huang; Zhao-Jun Pan; Chih-Hsiung Fu; Wen-Huei Chen; Wen-Chieh Tsai; Hong-Hwa Chen
Journal:  BMC Genomics       Date:  2011-07-12       Impact factor: 3.969

10.  A new orchid genus, Danxiaorchis, and phylogenetic analysis of the tribe Calypsoeae.

Authors:  Jun-Wen Zhai; Guo-Qiang Zhang; Li-Jun Chen; Xin-Ju Xiao; Ke-Wei Liu; Wen-Chieh Tsai; Yu-Yun Hsiao; Huai-Zhen Tian; Jia-Qiang Zhu; Mei-Na Wang; Fa-Guo Wang; Fu-Wu Xing; Zhong-Jian Liu
Journal:  PLoS One       Date:  2013-04-04       Impact factor: 3.240

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