Literature DB >> 20208161

Crystallization and preliminary crystallographic analysis of manganese(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from Bacillus sp. JF8.

Miki Senda1, Takashi Hatta, Kazuhide Kimbara, Toshiya Senda.   

Abstract

A thermostable manganese(II)-dependent 2,3-dihydroxybiphenyl-1,2-dioxygenase derived from Bacillus sp. JF8 was crystallized. The initial screening for crystallization was performed by the sitting-drop vapour-diffusion method using a crystallization robot, resulting in the growth of two crystal forms. The first crystal belonged to space group P1, with unit-cell parameters a = 62.7, b = 71.4, c = 93.6 A, alpha = 71.2, beta = 81.0, gamma = 64.0 degrees, and diffracted to 1.3 A resolution. The second crystal belonged to space group I222, with unit-cell parameters a = 74.2, b = 90.8, c = 104.3 A, and diffracted to 1.3 A resolution. Molecular-replacement trials using homoprotocatechuate 2,3-dioxygenase from Arthrobacter globiformis (28% amino-acid sequence identity) as a search model provided a satisfactory solution for both crystal forms.

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Year:  2010        PMID: 20208161      PMCID: PMC2833037          DOI: 10.1107/S1744309109054396

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

2.  Development of a fully automated macromolecular crystallization/observation robotic system, HTS-80.

Authors:  Hideyuki Miyatake; Seong-Hoon Kim; Itsuro Motegi; Hirofumi Matsuzaki; Hideyoshi Kitahara; Akira Higuchi; Kunio Miki
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-05-26

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  Catechol dioxygenases from Escherichia coli (MhpB) and Alcaligenes eutrophus (MpcI): sequence analysis and biochemical properties of a third family of extradiol dioxygenases.

Authors:  E L Spence; M Kawamukai; J Sanvoisin; H Braven; T D Bugg
Journal:  J Bacteriol       Date:  1996-09       Impact factor: 3.490

5.  The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates.

Authors:  Frederic H Vaillancourt; Genevieve Labbe; Nathalie M Drouin; Pascal D Fortin; Lindsay D Eltis
Journal:  J Biol Chem       Date:  2001-11-13       Impact factor: 5.157

Review 6.  The ins and outs of ring-cleaving dioxygenases.

Authors:  Frédéric H Vaillancourt; Jeffrey T Bolin; Lindsay D Eltis
Journal:  Crit Rev Biochem Mol Biol       Date:  2006 Jul-Aug       Impact factor: 8.250

7.  Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase.

Authors:  Nobuyuki Sato; Yoshitaka Uragami; Tomoko Nishizaki; Yoshito Takahashi; Gen Sazaki; Keisuke Sugimoto; Takamasa Nonaka; Eiji Masai; Masao Fukuda; Toshiya Senda
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

8.  Swapping metals in Fe- and Mn-dependent dioxygenases: evidence for oxygen activation without a change in metal redox state.

Authors:  Joseph P Emerson; Elena G Kovaleva; Erik R Farquhar; John D Lipscomb; Lawrence Que
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-20       Impact factor: 11.205

9.  Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases.

Authors:  Matthew W Vetting; Lawrence P Wackett; Lawrence Que; John D Lipscomb; Douglas H Ohlendorf
Journal:  J Bacteriol       Date:  2004-04       Impact factor: 3.490

10.  A manganese-dependent dioxygenase from Arthrobacter globiformis CM-2 belongs to the major extradiol dioxygenase family.

Authors:  Y R Boldt; M J Sadowsky; L B Ellis; L Que; L P Wackett
Journal:  J Bacteriol       Date:  1995-03       Impact factor: 3.490

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