Literature DB >> 20204430

Clarification and guidance on the proper usage of virus and virus species names.

Jens H Kuhn1, Peter B Jahrling.   

Abstract

A pivotal step in the development of a consistent nomenclature for virus classification was the introduction of the virus species concept by the International Committee on Taxonomy of Viruses (ICTV) in 1991. Yet, almost two decades later, many virologists still are unable to differentiate between virus species and actual viruses. Here we attempt to explain the origin of this confusion, clarify the difference between taxa and physical entities, and suggest simple measures that could be implemented by ICTV Study Groups to make virus taxonomy and nomenclature more accessible to laboratory virologists.

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Year:  2010        PMID: 20204430      PMCID: PMC2878132          DOI: 10.1007/s00705-010-0600-9

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  31 in total

1.  How to write the names of virus species.

Authors:  M H Van Regenmortel
Journal:  Arch Virol       Date:  1999       Impact factor: 2.574

2.  The naming of viruses: an urgent call to order.

Authors:  L Bos
Journal:  Arch Virol       Date:  1999       Impact factor: 2.574

Review 3.  Virus species, a much overlooked but essential concept in virus classification.

Authors:  M H Van Regenmortel
Journal:  Intervirology       Date:  1990       Impact factor: 1.763

4.  The order Mononegavirales.

Authors: 
Journal:  Arch Virol       Date:  1991       Impact factor: 2.574

5.  Taxon-specific suffixes for vernacular names.

Authors:  H J Vetten; A-L Haenni
Journal:  Arch Virol       Date:  2006-03-23       Impact factor: 2.574

6.  A broader definition of 'the virus species'.

Authors:  A J Gibbs; M J Gibbs
Journal:  Arch Virol       Date:  2006-05-22       Impact factor: 2.574

7.  The concept of virus species.

Authors:  M H Van Regenmortel; J Maniloff; C Calisher
Journal:  Arch Virol       Date:  1991       Impact factor: 2.574

8.  The order Mononegavirales--current status.

Authors:  C R Pringle
Journal:  Arch Virol       Date:  1997       Impact factor: 2.574

9.  Genetic analysis of feline caliciviruses associated with a hemorrhagic-like disease.

Authors:  Mohamed Abd-Eldaim; Leon Potgieter; Melissa Kennedy
Journal:  J Vet Diagn Invest       Date:  2005-09       Impact factor: 1.279

10.  International Committee on Taxonomy of Viruses and the 3,142 unassigned species.

Authors:  C M Fauquet; D Fargette
Journal:  Virol J       Date:  2005-08-16       Impact factor: 4.099

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  13 in total

1.  Proposal for a revised taxonomy of the family Filoviridae: classification, names of taxa and viruses, and virus abbreviations.

Authors:  Jens H Kuhn; Stephan Becker; Hideki Ebihara; Thomas W Geisbert; Karl M Johnson; Yoshihiro Kawaoka; W Ian Lipkin; Ana I Negredo; Sergey V Netesov; Stuart T Nichol; Gustavo Palacios; Clarence J Peters; Antonio Tenorio; Viktor E Volchkov; Peter B Jahrling
Journal:  Arch Virol       Date:  2010-10-30       Impact factor: 2.574

2.  Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Authors:  Charles H Calisher; Thomas Briese; J Rodney Brister; Rémi N Charrel; Ralf Dürrwald; Hideki Ebihara; Charles F Fulhorst; George Fú Gāo; Martin H Groschup; Andrew D Haddow; Timothy H Hyndman; Sandra Junglen; Boris Klempa; Jonas Klingström; Andrew M Kropinski; Mart Krupovic; A Desiree LaBeaud; Piet Maes; Norbert Nowotny; Márcio Roberto Teixeira Nunes; Susan L Payne; Sheli R Radoshitzky; Dennis Rubbenstroth; Sead Sabanadzovic; Takahide Sasaya; Mark D Stenglein; Arvind Varsani; Victoria Wahl; Scott C Weaver; Francisco Murilo Zerbini; Nikos Vasilakis; Jens H Kuhn
Journal:  Syst Biol       Date:  2019-09-01       Impact factor: 15.683

3.  The International Code of Virus Classification and Nomenclature (ICVCN): proposal for text changes for improved differentiation of viral taxa and viruses.

Authors:  Jens H Kuhn; Sheli R Radoshitzky; Sina Bavari; Peter B Jahrling
Journal:  Arch Virol       Date:  2013-02-16       Impact factor: 2.574

4.  Postexposure antibody prophylaxis protects nonhuman primates from filovirus disease.

Authors:  John M Dye; Andrew S Herbert; Ana I Kuehne; James F Barth; Majidat A Muhammad; Samantha E Zak; Ramon A Ortiz; Laura I Prugar; William D Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

5.  Ebola viral load at diagnosis associates with patient outcome and outbreak evolution.

Authors:  Marc-Antoine de La Vega; Grazia Caleo; Jonathan Audet; Xiangguo Qiu; Robert A Kozak; James I Brooks; Steven Kern; Anja Wolz; Armand Sprecher; Jane Greig; Kamalini Lokuge; David K Kargbo; Brima Kargbo; Antonino Di Caro; Allen Grolla; Darwyn Kobasa; James E Strong; Giuseppe Ippolito; Michel Van Herp; Gary P Kobinger
Journal:  J Clin Invest       Date:  2015-11-09       Impact factor: 14.808

6.  Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.

Authors:  Thomas S Postler; Anna N Clawson; Gaya K Amarasinghe; Christopher F Basler; Sbina Bavari; Mária Benko; Kim R Blasdell; Thomas Briese; Michael J Buchmeier; Alexander Bukreyev; Charles H Calisher; Kartik Chandran; Rémi Charrel; Christopher S Clegg; Peter L Collins; De La Torre Juan Carlos; Joseph L Derisi; Ralf G Dietzgen; Olga Dolnik; Ralf Dürrwald; John M Dye; Andrew J Easton; Sébastian Emonet; Pierre Formenty; Ron A M Fouchier; Elodie Ghedin; Jean-Paul Gonzalez; Balázs Harrach; Roger Hewson; Masayuki Horie; Dàohóng Jiang; Gary Kobinger; Hideki Kondo; Andrew M Kropinski; Mart Krupovic; Gael Kurath; Robert A Lamb; Eric M Leroy; Igor S Lukashevich; Andrea Maisner; Arcady R Mushegian; Sergey V Netesov; Norbert Nowotny; Jean L Patterson; Susan L Payne; Janusz T PaWeska; Clarence J Peters; Sheli R Radoshitzky; Bertus K Rima; Victor Romanowski; Dennis Rubbenstroth; Sead Sabanadzovic; Hélène Sanfaçon; Maria S Salvato; Martin Schwemmle; Sophie J Smither; Mark D Stenglein; David M Stone; Ayato Takada; Robert B Tesh; Keizo Tomonaga; Noël Tordo; Jonathan S Towner; Nikos Vasilakis; Viktor E Volchkov; Victoria Wahl-Jensen; Peter J Walker; Lin-Fa Wang; Arvind Varsani; Anna E Whitfield; F Murilo Zerbini; Jens H Kuhn
Journal:  Syst Biol       Date:  2017-05-01       Impact factor: 15.683

7.  Virus nomenclature below the species level: a standardized nomenclature for natural variants of viruses assigned to the family Filoviridae.

Authors:  Jens H Kuhn; Yiming Bao; Sina Bavari; Stephan Becker; Steven Bradfute; J Rodney Brister; Alexander A Bukreyev; Kartik Chandran; Robert A Davey; Olga Dolnik; John M Dye; Sven Enterlein; Lisa E Hensley; Anna N Honko; Peter B Jahrling; Karl M Johnson; Gary Kobinger; Eric M Leroy; Mark S Lever; Elke Mühlberger; Sergey V Netesov; Gene G Olinger; Gustavo Palacios; Jean L Patterson; Janusz T Paweska; Louise Pitt; Sheli R Radoshitzky; Erica Ollmann Saphire; Sophie J Smither; Robert Swanepoel; Jonathan S Towner; Guido van der Groen; Viktor E Volchkov; Victoria Wahl-Jensen; Travis K Warren; Manfred Weidmann; Stuart T Nichol
Journal:  Arch Virol       Date:  2012-09-23       Impact factor: 2.574

Review 8.  Biosecurity implications of new technology and discovery in plant virus research.

Authors:  Robin MacDiarmid; Brendan Rodoni; Ulrich Melcher; Francisco Ochoa-Corona; Marilyn Roossinck
Journal:  PLoS Pathog       Date:  2013-08-01       Impact factor: 6.823

9.  Identification of continuous human B-cell epitopes in the VP35, VP40, nucleoprotein and glycoprotein of Ebola virus.

Authors:  Pierre Becquart; Tanel Mahlakõiv; Dieudonné Nkoghe; Eric M Leroy
Journal:  PLoS One       Date:  2014-06-10       Impact factor: 3.240

10.  A web-based resource for designing therapeutics against Ebola Virus.

Authors:  Sandeep Kumar Dhanda; Kumardeep Chaudhary; Sudheer Gupta; Samir Kumar Brahmachari; Gajendra P S Raghava
Journal:  Sci Rep       Date:  2016-04-26       Impact factor: 4.379

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