| Literature DB >> 20198163 |
E Larsson1, M Ryberg, P-A Moreau, A Delcuse Mathiesen, S Jacobsson.
Abstract
The present study aimed at elucidating the structure of Inocybe subg. Inosperma sect. Rimosae but included also representatives from subg. Mallocybe and the genus Auritella. Phylogenetic relationships were inferred using ITS, LSU and mtSSU sequence data. The analyses recovered the ingroup as a monophyletic, strongly supported clade. The results indicate that recognizing Auritella on the genus level renders Inocybe paraphyletic. The species traditionally placed in sect. Rimosae were found to be distributed over two strongly supported clades, Maculata and Rimosae s.s. The Maculata clade clusters with sect. Cervicolores and the two represent subg. Inosperma in a strict sense. Rimosae s.s. emerges as an independent, supported clade well separated from Inosperma s.s. Twenty-one terminal groups were correlated with morphologically distinct species. In addition several taxa on single branches and minor less supported clades were recovered. A key to the identified species of the Maculata and Rimosae s.s. clades which occur in Northwest Europe is provided.Entities:
Keywords: Agaricales; Basidiomycota; molecular systematics; phylogeny; taxonomy
Year: 2009 PMID: 20198163 PMCID: PMC2802730 DOI: 10.3767/003158509X475913
Source DB: PubMed Journal: Persoonia ISSN: 0031-5850 Impact factor: 11.051
Data of specimens sequenced in this study.
| Species | Original specimen identification | Coll. ID. / Origin | Ecology, substrate | GenBank | ||
|---|---|---|---|---|---|---|
| ITS/LSU | mtSSU | |||||
| In a pasture | DQ389731 | |||||
| deciduous wood | AM882996 | |||||
| deciduous wood | FJ904178 | FJ904242 | ||||
| AM882939, | FJ904185 | |||||
| AM882941 | FJ904186 | |||||
| AM88294 | FJ904187 | |||||
| AM882948 | ||||||
| FJ904122 | FJ904181 | |||||
| AM882864 | FJ904183 | |||||
| AM882858 | FJ904184 | |||||
| FJ904123 | FJ904182 | |||||
| FJ904180 | ||||||
| FJ904179 | FJ904243 | |||||
| AM882885 | ||||||
| FJ904177 | FJ904240 | |||||
| AM882706 | FJ904241 | |||||
| FJ904134 | FJ904189 | |||||
| FJ904133 | FJ904188 | |||||
| AM882764 | ||||||
| AM882765 | FJ904224 | |||||
| FJ904161 | FJ904223 | |||||
| FJ904160 | FJ904222 | |||||
| FJ904159 | FJ904221 | |||||
| FJ904158 | FJ904220 | |||||
| AM882952 | ||||||
| FJ904129 | FJ904196 | |||||
| FJ904128 | FJ904195 | |||||
| AM882782 | ||||||
| AM882774 | ||||||
| AM882773 | ||||||
| AM882786 | FJ904193 | |||||
| FJ904125 | FJ904192 | |||||
| deciduous forest | FJ904142 | |||||
| FJ904155 | FJ904216 | |||||
| FJ904154 | FJ904215 | |||||
| AM882768 | FJ904219 | |||||
| AM882766 | ||||||
| FJ904157 | FJ904218 | |||||
| FJ904153 | ||||||
| FJ904152 | FJ904214 | |||||
| FJ904135 | FJ904190 | |||||
| deciduous forest | FJ904141 | |||||
| deciduous forest | FJ904140 | |||||
| AM882785 | ||||||
| AM882783 | ||||||
| AM882784 | ||||||
| FJ904139 | ||||||
| FJ904138 | FJ904203 | |||||
| AM882954 | ||||||
| FJ904173 | FJ904234 | |||||
| AM882953 | ||||||
| AM882955 | ||||||
| AM882956 | FJ904233 | |||||
| FJ904127 | ||||||
| FJ904126 | FJ904194 | |||||
| AM882950 | ||||||
| AM882951 | FJ904239 | |||||
| AM882949 | ||||||
| FJ904131 | FJ904198 | |||||
| AM882776 | FJ904199 | |||||
| AM882775 | ||||||
| FJ904130 | FJ904197 | |||||
| FJ904137 | FJ904202 | |||||
| AM882959 | ||||||
| AM882958 | ||||||
| AM882957 | FJ904232 | |||||
| AM882963 | ||||||
| AM882964 | ||||||
| FJ904172 | ||||||
| Mixed trees, pasture | AM882962 | |||||
| FJ904171 | FJ904231 | |||||
| FJ904170 | ||||||
| AM882994 | FJ904230 | |||||
| FJ904169 | ||||||
| FJ904168 | ||||||
| FJ904167 | ||||||
| FJ904148 | FJ904211 | |||||
| FJ904149 | ||||||
| FJ904156 | FJ904217 | |||||
| FJ904124 | FJ904191 | |||||
| AM882781 | ||||||
| AM882769 | FJ904204 | |||||
| AM882770 | ||||||
| AM882772 | ||||||
| AM882771 | FJ904205 | |||||
| FJ936169 | FJ904238 | |||||
| AM882974 | ||||||
| AM882961 | ||||||
| FJ936168 | FJ904237 | |||||
| AM882960 | FJ904236 | |||||
| FJ904174 | FJ904235 | |||||
| FJ904176 | ||||||
| FJ904175 | ||||||
| FJ904147 | FJ904210 | |||||
| FJ904146 | FJ904209 | |||||
| AM882761 | ||||||
| FJ904145 | ||||||
| AM882844 | ||||||
| FJ904144 | FJ904208 | |||||
| AM882762 | FJ904207 | |||||
| AM882763 | ||||||
| FJ904143 | FJ904206 | |||||
| FJ904150 | FJ904212 | |||||
| FJ904151 | FJ904213 | |||||
| FJ904136 | FJ904201 | |||||
| AM882780 | ||||||
| AM882778 | ||||||
| FJ904132 | FJ904200 | |||||
| FJ904165 | FJ904228 | |||||
| FJ904166 | FJ904229 | |||||
| FJ904164 | FJ904227 | |||||
| FJ904163 | FJ904226 | |||||
| FJ904162 | FJ904225 | |||||
Fig. 1Bayesian 50 % majority-rule consensus phylogram. Bayesian posterior probabilities and bootstrap values above 70 % from the maximum parsimony analysis are indicated on branches. Recovered major clades are named and marked with a scale bar and minor supported clades discussed in the text have been numbered A–F. Conocybe siliginea was used to root the tree.
Fig. 2One of the equally most parsimonious trees obtained from the maximum parsimony analysis of the Rimosae s.s. subclade A, presented as a mid-point rooted phylogram. Bootstrap values are indicated on branches.
Fig. 3One of the equally most parsimonious trees obtained from the maximum parsimony analysis of the Rimosae s.s. subclade D, presented as a mid-point rooted phylogram. Bootstrap values are indicated on branches.
Fig. 4a. Inocybe maculata (EL182/08); b. Inocybe maculata forma fulva (EL82/08); c. Inocybe dulcamaroides (EL112/06); d. Inocybe bulbosissima (EL75/07).