Literature DB >> 20195911

A state space transformation can yield identifiable models for tracer kinetic studies with enrichment data.

Rajasekhar Ramakrishnan1, Janak D Ramakrishnan.   

Abstract

Tracer studies are analyzed almost universally by multicompartmental models where the state variables are tracer amounts or activities in the different pools. The model parameters are rate constants, defined naturally by expressing fluxes as fractions of the source pools. We consider an alternative state space with tracer enrichments or specific activities as the state variables, with the rate constants redefined by expressing fluxes as fractions of the destination pools. Although the redefinition may seem unphysiological, the commonly computed fractional synthetic rate actually expresses synthetic flux as a fraction of the product mass (destination pool). We show that, for a variety of structures, provided the structure is linear and stationary, the model in the enrichment state space has fewer parameters than that in the activities state space, and is hence better both to study identifiability and to estimate parameters. The superiority of enrichment modeling is shown for structures where activity model unidentifiability is caused by multiple exit pathways; on the other hand, with a single exit pathway but with multiple untraced entry pathways, activity modeling is shown to be superior. With the present-day emphasis on mass isotopes, the tracer in human studies is often of a precursor, labeling most or all entry pathways. It is shown that for these tracer studies, models in the activities state space are always unidentifiable when there are multiple exit pathways, even if the enrichment in every pool is observed; on the other hand, the corresponding models in the enrichment state space have fewer parameters and are more often identifiable. Our results suggest that studies with labeled precursors are modeled best with enrichments.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20195911      PMCID: PMC3275642          DOI: 10.1007/s11538-010-9522-7

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  32 in total

1.  ON SOME TOPOLOGICAL PROPERTIES OF THE SYSTEMS OF COMPARTMENTS.

Authors:  A RESCIGNO
Journal:  Bull Math Biophys       Date:  1964-03

2.  Theorems on linear systems.

Authors:  J Z HEARON
Journal:  Ann N Y Acad Sci       Date:  1963-05-10       Impact factor: 5.691

3.  The design and analysis of isotope experiments.

Authors:  D B ZILVERSMIT
Journal:  Am J Med       Date:  1960-11       Impact factor: 4.965

4.  A Proof of the Occupancy Principle and the Mean-Transit-Time Theorem for Compartmental Models.

Authors:  Rajasekhar Ramakrishnan; Edward F Leonard; Ralph B Dell
Journal:  Math Biosci       Date:  1984-02-01       Impact factor: 2.144

5.  Three-fold effect of lovastatin treatment on low density lipoprotein metabolism in subjects with hyperlipidemia: increase in receptor activity, decrease in apoB production, and decrease in particle affinity for the receptor. Results from a novel triple-tracer approach.

Authors:  L Berglund; J L Witztum; N F Galeano; A S Khouw; H N Ginsberg; R Ramakrishnan
Journal:  J Lipid Res       Date:  1998-04       Impact factor: 5.922

6.  An Application of Berman's Work on Pool-Model Invariants in Analyzing Indistinguishable Models for Whole-Body Cholesterol Metabolism.

Authors:  Rajasekhar Ramakrishnan
Journal:  Math Biosci       Date:  1984-12       Impact factor: 2.144

7.  Models to interpret kinetic data in stable isotope tracer studies.

Authors:  C Cobelli; G Toffolo; D M Bier; R Nosadini
Journal:  Am J Physiol       Date:  1987-11

8.  Parameter and structural identifiability concepts and ambiguities: a critical review and analysis.

Authors:  C Cobelli; J J DiStefano
Journal:  Am J Physiol       Date:  1980-07

9.  Glucose kinetics in interstitial fluid can be predicted by compartmental modeling.

Authors:  A Gastaldelli; J M Schwarz; E Caveggion; L D Traber; D L Traber; J Rosenblatt; G Toffolo; C Cobelli; R R Wolfe
Journal:  Am J Physiol       Date:  1997-03

10.  Lovastatin therapy reduces low density lipoprotein apoB levels in subjects with combined hyperlipidemia by reducing the production of apoB-containing lipoproteins: implications for the pathophysiology of apoB production.

Authors:  Y Arad; R Ramakrishnan; H N Ginsberg
Journal:  J Lipid Res       Date:  1990-04       Impact factor: 5.922

View more
  1 in total

1.  Vitamin E absorption and kinetics in healthy women, as modulated by food and by fat, studied using 2 deuterium-labeled α-tocopherols in a 3-phase crossover design.

Authors:  Maret G Traber; Scott W Leonard; Ifechukwude Ebenuwa; Pierre-Christian Violet; Yu Wang; Mahtab Niyyati; Sebastian Padayatty; Hongbin Tu; Amber Courville; Shanna Bernstein; Jaewoo Choi; Robert Shamburek; Sheila Smith; Brian Head; Gerd Bobe; Rajasekhar Ramakrishnan; Mark Levine
Journal:  Am J Clin Nutr       Date:  2019-11-01       Impact factor: 7.045

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.