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Literature DB >> 20195250

Waltz, an exciting new move in amyloid prediction.

Mikael Oliveberg.

Abstract

Mesh：

Substances：
Amyloid

Year: 2010 PMID： 20195250 DOI： 10.1038/nmeth0310-187

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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10 in total

1. Short amino acid stretches can mediate amyloid formation in globular proteins: the Src homology 3 (SH3) case.

Authors: Salvador Ventura; Jesús Zurdo; Saravanakumar Narayanan; Matilde Parreño; Ramón Mangues; Bernd Reif; Fabrizio Chiti; Elisa Giannoni; Christopher M Dobson; Francesc X Aviles; Luis Serrano
Journal: Proc Natl Acad Sci U S A Date: 2004-05-03 Impact factor: 11.205

Review 2. Theory of protein folding.

Authors: José Nelson Onuchic; Peter G Wolynes
Journal: Curr Opin Struct Biol Date: 2004-02 Impact factor: 6.809

3. Structure of the cross-beta spine of amyloid-like fibrils.

Authors: Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Anders Ø Madsen; Christian Riekel; Robert Grothe; David Eisenberg
Journal: Nature Date: 2005-06-09 Impact factor: 49.962

Review 4. Protein misfolding, functional amyloid, and human disease.

Authors: Fabrizio Chiti; Christopher M Dobson
Journal: Annu Rev Biochem Date: 2006 Impact factor: 23.643

Review 5. Protein aggregation and amyloidosis: confusion of the kinds?

Authors: Frederic Rousseau; Joost Schymkowitz; Luis Serrano
Journal: Curr Opin Struct Biol Date: 2006-01-24 Impact factor: 6.809

6. Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins.

Authors: Stavros J Hamodrakas; Christina Liappa; Vassiliki A Iconomidou
Journal: Int J Biol Macromol Date: 2007-03-25 Impact factor: 6.953

7. Exploring the sequence determinants of amyloid structure using position-specific scoring matrices.

Authors: Sebastian Maurer-Stroh; Maja Debulpaep; Nico Kuemmerer; Manuela Lopez de la Paz; Ivo Cristiano Martins; Joke Reumers; Kyle L Morris; Alastair Copland; Louise Serpell; Luis Serrano; Joost W H Schymkowitz; Frederic Rousseau
Journal: Nat Methods Date: 2010-02-14 Impact factor: 28.547

Review 8. Folding versus aggregation: polypeptide conformations on competing pathways.

Authors: Thomas R Jahn; Sheena E Radford
Journal: Arch Biochem Biophys Date: 2007-06-08 Impact factor: 4.013

Review 9. Pathogenesis of polyglutamine disorders: aggregation revisited.

Authors: Andrej Michalik; Christine Van Broeckhoven
Journal: Hum Mol Genet Date: 2003-10-15 Impact factor: 6.150

10. General structural motifs of amyloid protofilaments.

Authors: Neil Ferguson; Johanna Becker; Henning Tidow; Sandra Tremmel; Timothy D Sharpe; Gerd Krause; Jeremy Flinders; Miriana Petrovich; John Berriman; Hartmut Oschkinat; Alan R Fersht
Journal: Proc Natl Acad Sci U S A Date: 2006-10-23 Impact factor: 11.205

10 in total

16 in total

1. The glaucoma-associated olfactomedin domain of myocilin forms polymorphic fibrils that are constrained by partial unfolding and peptide sequence.

Authors: Shannon E Hill; Rebecca K Donegan; Raquel L Lieberman
Journal: J Mol Biol Date: 2013-12-09 Impact factor: 5.469

Review 10. Computational and experimental approaches to reveal the effects of single nucleotide polymorphisms with respect to disease diagnostics.

Authors: Tugba G Kucukkal; Ye Yang; Susan C Chapman; Weiguo Cao; Emil Alexov
Journal: Int J Mol Sci Date: 2014-05-30 Impact factor: 5.923

Waltz, an exciting new move in amyloid prediction.

1. Short amino acid stretches can mediate amyloid formation in globular proteins: the Src homology 3 (SH3) case.

Review 2. Theory of protein folding.

3. Structure of the cross-beta spine of amyloid-like fibrils.

Review 4. Protein misfolding, functional amyloid, and human disease.

Review 5. Protein aggregation and amyloidosis: confusion of the kinds?

6. Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins.

7. Exploring the sequence determinants of amyloid structure using position-specific scoring matrices.

Review 8. Folding versus aggregation: polypeptide conformations on competing pathways.

Review 9. Pathogenesis of polyglutamine disorders: aggregation revisited.

10. General structural motifs of amyloid protofilaments.

1. The glaucoma-associated olfactomedin domain of myocilin forms polymorphic fibrils that are constrained by partial unfolding and peptide sequence.

2. Cutting off functional loops from homodimeric enzyme superoxide dismutase 1 (SOD1) leaves monomeric β-barrels.

3. The C-terminus hot spot region helps in the fibril formation of bacteriophage-associated hyaluronate lyase (HylP2).

4. Staphylococcal Bap Proteins Build Amyloid Scaffold Biofilm Matrices in Response to Environmental Signals.

5. Contact-dependent killing by Caulobacter crescentus via cell surface-associated, glycine zipper proteins.

Review 6. Interaction of the Human Contact System with Pathogens-An Update.

7. Structural Arrangement within a Peptide Fibril Derived from the Glaucoma-Associated Myocilin Olfactomedin Domain.

8. Ligand binding and aggregation of pathogenic SOD1.

9. Prediction of Peptide and Protein Propensity for Amyloid Formation.

Review 10. Computational and experimental approaches to reveal the effects of single nucleotide polymorphisms with respect to disease diagnostics.