Literature DB >> 20182620

Modeling auxin-regulated development.

Pawel Krupinski1, Henrik Jönsson.   

Abstract

The phytohormone auxin plays an essential role in many aspects of plant growth and development. Its patterning, intercellular transport, and means of signaling have been extensively studied both in experiments and computational models. Here, we present a review of models of auxin-regulated development in different plant tissues. This includes models of organ initiation in the shoot apical meristem, development of vascular strands in leafs and stems, and auxin-related functioning in roots. The examples show how mathematical modeling can help to examine expected and unexpected behavior of the system, challenge our knowledge and hypotheses, obtain quantitative results, or suggest new experiments and ways to approach a problem.

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Year:  2010        PMID: 20182620      PMCID: PMC2828283          DOI: 10.1101/cshperspect.a001560

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  39 in total

Review 1.  Plant gravitropism. Unraveling the ups and downs of a complex process.

Authors:  Elison B Blancaflor; Patrick H Masson
Journal:  Plant Physiol       Date:  2003-12       Impact factor: 8.340

2.  Phyllotactic patterns on plants.

Authors:  Patrick D Shipman; Alan C Newell
Journal:  Phys Rev Lett       Date:  2004-04-23       Impact factor: 9.161

3.  The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots.

Authors:  Ikram Blilou; Jian Xu; Marjolein Wildwater; Viola Willemsen; Ivan Paponov; Jirí Friml; Renze Heidstra; Mitsuhiro Aida; Klaus Palme; Ben Scheres
Journal:  Nature       Date:  2005-01-06       Impact factor: 49.962

4.  Self-organization of the vascular system in plant leaves: inter-dependent dynamics of auxin flux and carrier proteins.

Authors:  Francois G Feugier; A Mochizuki; Y Iwasa
Journal:  J Theor Biol       Date:  2005-10-21       Impact factor: 2.691

5.  Mathematical model of polar auxin transport.

Authors:  A C Leopold; O F Hall
Journal:  Plant Physiol       Date:  1966-11       Impact factor: 8.340

6.  An auxin-driven polarized transport model for phyllotaxis.

Authors:  Henrik Jönsson; Marcus G Heisler; Bruce E Shapiro; Elliot M Meyerowitz; Eric Mjolsness
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-13       Impact factor: 11.205

7.  A plausible model of phyllotaxis.

Authors:  Richard S Smith; Soazig Guyomarc'h; Therese Mandel; Didier Reinhardt; Cris Kuhlemeier; Przemyslaw Prusinkiewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

8.  Canalization without flux sensors: a traveling-wave hypothesis.

Authors:  Roeland M H Merks; Yves Van de Peer; Dirk Inzé; Gerrit T S Beemster
Journal:  Trends Plant Sci       Date:  2007-08-31       Impact factor: 18.313

9.  Developmental patterning by mechanical signals in Arabidopsis.

Authors:  Olivier Hamant; Marcus G Heisler; Henrik Jönsson; Pawel Krupinski; Magalie Uyttewaal; Plamen Bokov; Francis Corson; Patrik Sahlin; Arezki Boudaoud; Elliot M Meyerowitz; Yves Couder; Jan Traas
Journal:  Science       Date:  2008-12-12       Impact factor: 47.728

10.  Auxin-regulated cell polarity: an inside job?

Authors:  Eric M Kramer
Journal:  Trends Plant Sci       Date:  2009-04-20       Impact factor: 18.313

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  18 in total

1.  A model for leaf initiation: determination of phyllotaxis by waves in the generative circle.

Authors:  Barbara Abraham-Shrauner; Barbara G Pickard
Journal:  Plant Signal Behav       Date:  2011-11

Review 2.  Auxin transporters--why so many?

Authors:  Eva Zazímalová; Angus S Murphy; Haibing Yang; Klára Hoyerová; Petr Hosek
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03       Impact factor: 10.005

3.  Localized auxin peaks in concentration-based transport models of the shoot apical meristem.

Authors:  Delphine Draelants; Daniele Avitabile; Wim Vanroose
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

4.  Bimodal regulation of ICR1 levels generates self-organizing auxin distribution.

Authors:  Ora Hazak; Uri Obolski; Tomáš Prat; Jiří Friml; Lilach Hadany; Shaul Yalovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-02       Impact factor: 11.205

5.  Multiscale modelling of auxin transport in the plant-root elongation zone.

Authors:  L R Band; J R King
Journal:  J Math Biol       Date:  2011-10-20       Impact factor: 2.259

6.  Patterning of leaf vein networks by convergent auxin transport pathways.

Authors:  Megan G Sawchuk; Alexander Edgar; Enrico Scarpella
Journal:  PLoS Genet       Date:  2013-02-21       Impact factor: 5.917

7.  Spatiotemporal modelling of hormonal crosstalk explains the level and patterning of hormones and gene expression in Arabidopsis thaliana wild-type and mutant roots.

Authors:  Simon Moore; Xiaoxian Zhang; Anna Mudge; James H Rowe; Jennifer F Topping; Junli Liu; Keith Lindsey
Journal:  New Phytol       Date:  2015-04-23       Impact factor: 10.151

8.  Interaction of PLS and PIN and hormonal crosstalk in Arabidopsis root development.

Authors:  Junli Liu; Saher Mehdi; Jennifer Topping; Jirí Friml; Keith Lindsey
Journal:  Front Plant Sci       Date:  2013-04-05       Impact factor: 5.753

9.  Mechano-chemical aspects of organ formation in Arabidopsis thaliana: the relationship between auxin and pectin.

Authors:  Siobhan A Braybrook; Alexis Peaucelle
Journal:  PLoS One       Date:  2013-03-12       Impact factor: 3.240

10.  The flux-based PIN allocation mechanism can generate either canalyzed or diffuse distribution patterns depending on geometry and boundary conditions.

Authors:  Michael Luke Walker; Etienne Farcot; Jan Traas; Christophe Godin
Journal:  PLoS One       Date:  2013-01-28       Impact factor: 3.240

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