Literature DB >> 20181819

Comparison of BIOMED-2 versus laboratory-developed polymerase chain reaction assays for detecting T-cell receptor-gamma gene rearrangements.

Keyur P Patel1, Qiulu Pan, Yanhua Wang, Robert W Maitta, Juan Du, Xiaonan Xue, Juan Lin, Howard Ratech.   

Abstract

Detecting clonal T-cell receptor (TCR)-gamma gene rearrangements (GRs) is an important adjunct test for diagnosing T-cell lymphoma. We compared a recently described assay (BIOMED-2 protocol), which targets multiple variable (V) gene segments in two polymerase chain reaction (PCR) reactions (multi-V), with a frequently referenced assay that targets a single V gene segment in four separate PCR reactions (mono-V). A total of 144 consecutive clinical DNA samples were prospectively tested for T-cell clonality by PCR using laboratory-developed mono-V and commercial multi-V primer sets for TCR-gamma GR. The combination of TCR-beta, mono-V TCR-gamma and multi-V TCR-gamma detected more clonal cases (68/144, 47%) than any individual PCR assay. We detected clonal TCR-beta GR in 47/68 (69%) cases. Using either mono-V or multi-V TCR-gamma primers, the sensitivities for detecting clonality were 52/68 (76%) or 51/68 (75%). Using both mono-V and multi-V TCR-gamma primers improved the sensitivity for detecting clonality, 60/68 (88%). Combining either mono-V or multi-V TCR-gamma primers with TCR-beta primers also improved the sensitivity, 64/68 (94%). Significantly, TCR-gamma V11 GRs could only be detected using the mono-V-PCR primers. We conclude that using more than one T-cell PCR assay can enhance the overall sensitivity for detecting T-cell clonality.

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Year:  2010        PMID: 20181819      PMCID: PMC2871730          DOI: 10.2353/jmoldx.2010.090042

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.568


  35 in total

1.  A PCR assay for detecting clonal rearrangement of the TCR-gamma gene.

Authors:  C Lamberson; R E Hutchison; A E Shrimpton
Journal:  Mol Diagn       Date:  2001-06

2.  Effectiveness of capillary electrophoresis using fluorescent-labeled primers in detecting T-cell receptor gamma gene rearrangements.

Authors:  Timothy C Greiner; Ronald J Rubocki
Journal:  J Mol Diagn       Date:  2002-08       Impact factor: 5.568

3.  Evaluation of T cell receptor testing in lymphoid neoplasms: results of a multicenter study of 29 extracted DNA and paraffin-embedded samples.

Authors:  D A Arber; R M Braziel; A Bagg; K E Bijwaard
Journal:  J Mol Diagn       Date:  2001-11       Impact factor: 5.568

4.  PCR analysis of immunoglobulin heavy chain (IgH) and TcR-gamma chain gene rearrangements in the diagnosis of lymphoproliferative disorders: results of a study of 525 cases.

Authors:  C Thériault; S Galoin; S Valmary; J Selves; L Lamant; D Roda; F Rigal-Huguet; P Brousset; G Delsol; T Al Saati
Journal:  Mod Pathol       Date:  2000-12       Impact factor: 7.842

5.  Oligonucleotide melting temperatures under PCR conditions: nearest-neighbor corrections for Mg(2+), deoxynucleotide triphosphate, and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas.

Authors:  N von Ahsen; C T Wittwer; E Schütz
Journal:  Clin Chem       Date:  2001-11       Impact factor: 8.327

6.  IgH, TCR-gamma, and TCR-beta gene rearrangement in 80 B- and T-cell non-Hodgkin's lymphomas: study of the association between proliferation and the so-called "aberrant" patterns.

Authors:  M J García; B Martínez-Delgado; J J Granizo; J Benítez; C Rivas
Journal:  Diagn Mol Pathol       Date:  2001-06

7.  Detection and typing of HSV-1, HSV-2, and VZV by a multiplex polymerase chain reaction.

Authors:  P Markoulatos; A Georgopoulou; C Kotsovassilis; P Karabogia-Karaphillides; N Spyrou
Journal:  J Clin Lab Anal       Date:  2000       Impact factor: 2.352

Review 8.  Multiplex polymerase chain reaction: a practical approach.

Authors:  P Markoulatos; N Siafakas; M Moncany
Journal:  J Clin Lab Anal       Date:  2002       Impact factor: 2.352

9.  Coincident myelodysplastic syndrome and T-cell large granular lymphocytic disease: clinical and pathophysiological features.

Authors:  Y Saunthararajah; J L Molldrem; M Rivera; A Williams; M Stetler-Stevenson; L Sorbara; N S Young; J A Barrett
Journal:  Br J Haematol       Date:  2001-01       Impact factor: 6.998

10.  Comparative evaluation of PCR-based methods for the assessment of T cell clonality in the diagnosis of T cell lymphoma.

Authors:  Suzanne M Cairns; Jeremy M E Taylor; Paul R Gould; Dominic V Spagnolo
Journal:  Pathology       Date:  2002-08       Impact factor: 5.306

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  14 in total

1.  Assay design affects the interpretation of T-cell receptor gamma gene rearrangements: comparison of the performance of a one-tube assay with the BIOMED-2-based TCRG gene clonality assay.

Authors:  Allison M Cushman-Vokoun; Solomon Connealy; Timothy C Greiner
Journal:  J Mol Diagn       Date:  2010-11       Impact factor: 5.568

Review 2.  The evolution of clonality testing in the diagnosis and monitoring of hematological malignancies.

Authors:  Anna Gazzola; Claudia Mannu; Maura Rossi; Maria Antonella Laginestra; Maria Rosaria Sapienza; Fabio Fuligni; Maryam Etebari; Federica Melle; Elena Sabattini; Claudio Agostinelli; Francesco Bacci; Carlo Alberto Sagramoso Sacchetti; Stefano Aldo Pileri; Pier Paolo Piccaluga
Journal:  Ther Adv Hematol       Date:  2014-04

3.  New developments in the pathology of malignant lymphoma: a review of the literature published from October 2009 to January 2010.

Authors:  J Han van Krieken
Journal:  J Hematop       Date:  2010-06-02       Impact factor: 0.196

4.  Clinicopathological analysis of the hydroa vacciniforme-like lymphoproliferative disorder with natural killer cell phenotype compared with cutaneous natural killer T-cell lymphoma.

Authors:  Guan-Nan Wang; Yong Cui; Wu-Gan Zhao; Ling Li; Xu-Dong Zhang; Yu Chang; Xian-Zheng Gao; Ye Li; Ming-Zhi Zhang; Wen-Cai Li
Journal:  Exp Ther Med       Date:  2018-09-19       Impact factor: 2.447

Review 5.  Two cases of phenotypic switch of primary cutaneous T cell lymphoma after treatment with an aggressive course and review of the literature.

Authors:  Etan Marks; Yang Shi; Yanhua Wang
Journal:  Virchows Arch       Date:  2019-06-19       Impact factor: 4.064

6.  Evaluation of a worldwide EQA scheme for complex clonality analysis of clinical lymphoproliferative cases demonstrates a learning effect.

Authors:  Cleo Keppens; Elke Boone; Paula Gameiro; Véronique Tack; Elisabeth Moreau; Elizabeth Hodges; Paul Evans; Monika Brüggemann; Ian Carter; Dido Lenze; Maria Eugenia Sarasquete; Markus Möbs; Hongxiang Liu; Elisabeth M C Dequeker; Patricia J T A Groenen
Journal:  Virchows Arch       Date:  2021-03-08       Impact factor: 4.064

7.  The Generation of Human γδT Cell-Derived Induced Pluripotent Stem Cells from Whole Peripheral Blood Mononuclear Cell Culture.

Authors:  Daisuke Watanabe; Michiyo Koyanagi-Aoi; Mariko Taniguchi-Ikeda; Yukiko Yoshida; Takeshi Azuma; Takashi Aoi
Journal:  Stem Cells Transl Med       Date:  2017-11-21       Impact factor: 6.940

8.  The role of molecular pathology in the diagnosis of cutaneous lymphomas.

Authors:  Philipp W Raess; Adam Bagg
Journal:  Patholog Res Int       Date:  2012-11-19

Review 9.  EuroClonality/BIOMED-2 guidelines for interpretation and reporting of Ig/TCR clonality testing in suspected lymphoproliferations.

Authors:  A W Langerak; P J T A Groenen; M Brüggemann; K Beldjord; C Bellan; L Bonello; E Boone; G I Carter; M Catherwood; F Davi; M-H Delfau-Larue; T Diss; P A S Evans; P Gameiro; R Garcia Sanz; D Gonzalez; D Grand; A Håkansson; M Hummel; H Liu; L Lombardia; E A Macintyre; B J Milner; S Montes-Moreno; E Schuuring; M Spaargaren; E Hodges; J J M van Dongen
Journal:  Leukemia       Date:  2012-08-24       Impact factor: 11.528

10.  Clonality analysis of lymphoid proliferations using the BIOMED-2 clonality assays: a single institution experience.

Authors:  Ira Kokovic; Barbara Jezersek Novakovic; Petra Cerkovnik; Srdjan Novakovic
Journal:  Radiol Oncol       Date:  2014-04-25       Impact factor: 2.991

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