Literature DB >> 20181483

Multitasking with ubiquitin through multivalent interactions.

Fen Liu1, Kylie J Walters.   

Abstract

Ubiquitylation - the post-translational modification of proteins with ubiquitin - serves powerful regulatory roles in eukaryotes. It can label proteins for destruction or activate gene transcription. Despite its versatility, ubiquitin is used to signal for cellular events with exquisite specificity. To achieve both versatility and specificity, ubiquitin signaling pathways use multivalency, namely the coordinated use of multiple interaction surfaces. Multivalent interactions regulate each stage of ubiquitin signaling pathways, and appear within the ubiquitin signal, the ubiquitylated substrate, ubiquitin processing enzymes and ubiquitin recognition proteins. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20181483      PMCID: PMC3917509          DOI: 10.1016/j.tibs.2010.01.002

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  100 in total

1.  Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by tandem UIMs of RAP80.

Authors:  Yusuke Sato; Azusa Yoshikawa; Hisatoshi Mimura; Masami Yamashita; Atsushi Yamagata; Shuya Fukai
Journal:  EMBO J       Date:  2009-06-18       Impact factor: 11.598

2.  Crystal structure of the NEMO ubiquitin-binding domain in complex with Lys 63-linked di-ubiquitin.

Authors:  Azusa Yoshikawa; Yusuke Sato; Masami Yamashita; Hisatoshi Mimura; Atsushi Yamagata; Shuya Fukai
Journal:  FEBS Lett       Date:  2009-09-18       Impact factor: 4.124

3.  ATM activates p53 by regulating MDM2 oligomerization and E3 processivity.

Authors:  Qian Cheng; Lihong Chen; Zhenyu Li; William S Lane; Jiandong Chen
Journal:  EMBO J       Date:  2009-12-16       Impact factor: 11.598

4.  Two-sided ubiquitin binding explains specificity of the TAB2 NZF domain.

Authors:  Yogesh Kulathu; Masato Akutsu; Anja Bremm; Kay Hofmann; David Komander
Journal:  Nat Struct Mol Biol       Date:  2009-11-22       Impact factor: 15.369

Review 5.  Ubiquitin-binding domains - from structures to functions.

Authors:  Ivan Dikic; Soichi Wakatsuki; Kylie J Walters
Journal:  Nat Rev Mol Cell Biol       Date:  2009-10       Impact factor: 94.444

6.  Polo-like kinase-1 phosphorylates MDM2 at Ser260 and stimulates MDM2-mediated p53 turnover.

Authors:  Sylvia S Dias; Carol Hogan; Anna-Maria Ochocka; David W Meek
Journal:  FEBS Lett       Date:  2009-10-13       Impact factor: 4.124

7.  Stress-induced phosphorylation of S. pombe Atf1 abrogates its interaction with F box protein Fbh1.

Authors:  Clare L Lawrence; Nic Jones; Caroline R M Wilkinson
Journal:  Curr Biol       Date:  2009-12-01       Impact factor: 10.834

8.  The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria.

Authors:  Teresa L M Thurston; Grigory Ryzhakov; Stuart Bloor; Natalia von Muhlinen; Felix Randow
Journal:  Nat Immunol       Date:  2009-10-11       Impact factor: 25.606

9.  Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability.

Authors:  Mahesh B Chandrasekharan; Fu Huang; Zu-Wen Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-10       Impact factor: 11.205

10.  Direct activation of protein kinases by unanchored polyubiquitin chains.

Authors:  Zong-Ping Xia; Lijun Sun; Xiang Chen; Gabriel Pineda; Xiaomo Jiang; Anirban Adhikari; Wenwen Zeng; Zhijian J Chen
Journal:  Nature       Date:  2009-08-12       Impact factor: 49.962

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  36 in total

Review 1.  "Without Ub I am nothing": NEMO as a multifunctional player in ubiquitin-mediated control of NF-kappaB activation.

Authors:  Jérémie Gautheron; Gilles Courtois
Journal:  Cell Mol Life Sci       Date:  2010-05-26       Impact factor: 9.261

2.  Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome.

Authors:  Xiang Chen; Leah Randles; Ke Shi; Sergey G Tarasov; Hideki Aihara; Kylie J Walters
Journal:  Structure       Date:  2016-07-07       Impact factor: 5.006

3.  Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome.

Authors:  Yuan Shi; Xiang Chen; Suzanne Elsasser; Bradley B Stocks; Geng Tian; Byung-Hoon Lee; Yanhong Shi; Naixia Zhang; Stefanie A H de Poot; Fabian Tuebing; Shuangwu Sun; Jacob Vannoy; Sergey G Tarasov; John R Engen; Daniel Finley; Kylie J Walters
Journal:  Science       Date:  2016-02-19       Impact factor: 47.728

4.  An Extended Conformation for K48 Ubiquitin Chains Revealed by the hRpn2:Rpn13:K48-Diubiquitin Structure.

Authors:  Xiuxiu Lu; Danielle L Ebelle; Hiroshi Matsuo; Kylie J Walters
Journal:  Structure       Date:  2020-03-10       Impact factor: 5.006

Review 5.  The N-end rule pathway and regulation by proteolysis.

Authors:  Alexander Varshavsky
Journal:  Protein Sci       Date:  2011-08       Impact factor: 6.725

6.  Ubiquitin in disguise unveils a cryptic binding site in 1.2-MDa anaphase-promoting complex/cyclosome.

Authors:  Kylie J Walters
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-01       Impact factor: 11.205

7.  Impact of Losing hRpn13 Pru or UCHL5 on Proteasome Clearance of Ubiquitinated Proteins and RA190 Cytotoxicity.

Authors:  Vasty Osei-Amponsa; Vinidhra Sridharan; Mayank Tandon; Christine N Evans; Kimberly Klarmann; Kwong Tai Cheng; Justin Lack; Raj Chari; Kylie J Walters
Journal:  Mol Cell Biol       Date:  2020-08-28       Impact factor: 4.272

8.  Mechanisms of noncanonical binding dynamics in multivalent protein-protein interactions.

Authors:  Wesley J Errington; Bence Bruncsics; Casim A Sarkar
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

9.  Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.

Authors:  Edmond R Watson; Christy R R Grace; Wei Zhang; Darcie J Miller; Iain F Davidson; J Rajan Prabu; Shanshan Yu; Derek L Bolhuis; Elizaveta T Kulko; Ronnald Vollrath; David Haselbach; Holger Stark; Jan-Michael Peters; Nicholas G Brown; Sachdev S Sidhu; Brenda A Schulman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-26       Impact factor: 11.205

10.  Structural insights into proteasome activation by the 19S regulatory particle.

Authors:  Aaron Ehlinger; Kylie J Walters
Journal:  Biochemistry       Date:  2013-05-14       Impact factor: 3.162

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