Literature DB >> 20179829

DNA manipulation, sorting, and mapping in nanofluidic systems.

Stephen L Levy1, Harold G Craighead.   

Abstract

Fluidic systems with nanometre length scales enable sensitive analysis of DNA molecules. Nanofluidic systems have been used to probe conformational, dynamic, and entropic properties of DNA molecules, to rapidly sort DNA molecules based on length dependent interactions with their confining environment, and for determining the spatial location of genetic information along long DNA molecules. In this critical review, recent experiments utilizing fluidic systems comprised of nanochannels, nanoslits, nanopores, and zero-mode waveguides for DNA analysis are reviewed (161 references).

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Year:  2010        PMID: 20179829     DOI: 10.1039/b820266b

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  25 in total

1.  Surface charge, electroosmotic flow and DNA extension in chemically modified thermoplastic nanoslits and nanochannels.

Authors:  Franklin I Uba; Swathi R Pullagurla; Nichanun Sirasunthorn; Jiahao Wu; Sunggook Park; Rattikan Chantiwas; Yoon-Kyoung Cho; Heungjoo Shin; Steven A Soper
Journal:  Analyst       Date:  2015-01-07       Impact factor: 4.616

2.  Micro- and nanofluidic technologies for epigenetic profiling.

Authors:  Toshiki Matsuoka; Byoung Choul Kim; Christopher Moraes; Minsub Han; Shuichi Takayama
Journal:  Biomicrofluidics       Date:  2013-07-24       Impact factor: 2.800

3.  Modeling the relaxation time of DNA confined in a nanochannel.

Authors:  Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2013-10-22       Impact factor: 2.800

4.  Fluctuations of DNA mobility in nanofluidic entropic traps.

Authors:  Lingling Wu; Stephen Levy
Journal:  Biomicrofluidics       Date:  2014-07-08       Impact factor: 2.800

5.  Integrated view of genome structure and sequence of a single DNA molecule in a nanofluidic device.

Authors:  Rodolphe Marie; Jonas N Pedersen; David L V Bauer; Kristian H Rasmussen; Mohammed Yusuf; Emanuela Volpi; Henrik Flyvbjerg; Anders Kristensen; Kalim U Mir
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-11       Impact factor: 11.205

6.  Relationship between frequency and deflection angle in the DNA prism.

Authors:  Zhen Chen; Kevin D Dorfman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-01-28

7.  Interplay between chain stiffness and excluded volume of semiflexible polymers confined in nanochannels.

Authors:  Abhiram Muralidhar; Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2014-02-28       Impact factor: 3.488

8.  Effects of Hfq on the conformation and compaction of DNA.

Authors:  Kai Jiang; Ce Zhang; Durgarao Guttula; Fan Liu; Jeroen A van Kan; Christophe Lavelle; Krzysztof Kubiak; Antoine Malabirade; Alain Lapp; Véronique Arluison; Johan R C van der Maarel
Journal:  Nucleic Acids Res       Date:  2015-03-30       Impact factor: 16.971

Review 9.  Flexible fabrication and applications of polymer nanochannels and nanoslits.

Authors:  Rattikan Chantiwas; Sunggook Park; Steven A Soper; Byoung Choul Kim; Shuichi Takayama; Vijaya Sunkara; Hyundoo Hwang; Yoon-Kyoung Cho
Journal:  Chem Soc Rev       Date:  2011-03-25       Impact factor: 54.564

Review 10.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

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