| Literature DB >> 20169157 |
Bonnie R Joubert1, Nora Franceschini, Victor Mwapasa, Kari E North, Steven R Meshnick.
Abstract
BACKGROUND: Human promoter polymorphisms in the chemokine co-receptor 5 gene (CCR5) have been noted for association with mother-to-child transmission of HIV (HIV MTCT) as well as reduced receptor expression in vitro, but have not been clearly associated with CCR5 expression in vivo. Placental expression of CCR5 may be influenced by such polymorphisms as well as other in vivo regulatory factors. METHODOLOGY/PRINCIPALEntities:
Mesh:
Substances:
Year: 2010 PMID: 20169157 PMCID: PMC2821402 DOI: 10.1371/journal.pone.0009212
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Frequencies and mean CCR5 expression by CCR5 SNP/haplotype category.
| SNP/Haplotype | Genotype/# Copies£ | N | Log % Change by GenotypeN, Mean (Range) | β (95% CI) |
| OR (95% CI) |
|
|
| VVVIII | 1426210 | 131, 5,82 (−1.61, 14.55)57, 5.59 (0.69, 12.33)10, 5.36 (2.30, 7.15) | −0.27 (−0.87, 0.32) | 0.374 | 0.69 (0.39, 1.24) | 0.213 |
|
| AAAGGG | 190211 | 177, 5.74 (−1.61, 14.55)19, 5.75 (2.56, 9.33)0, NA | 0.01 (−0.95, 0.97) | 0.981 | 0.97 (0.38, 2.51) | 0.957 |
|
| GGGTTT | 1029515 | 94, 6.09 (2.30, 14.55)89, 5.40 (−1.61, 9.91)13, 5.52 (2.77, 9.43) | −0.67 (−1.23, −0.11) | 0.019 | 0.61 (0.35, 1.08) | 0.091 |
|
| AAAGGG | 5711342 | 53, 5.97 (−1.61, 14.55)105, 5.62 (0.69, 12.33)38, 5.76 (2.30, 9.25) | −0.32 (−0.96, 0.32) | 0.324 | 0.62 (0.33, 1.17) | 0.142 |
|
| CCCTTT | 5811242 | 54, 6.00 (−1.61, 14.55)104, 5.62 (0.69, 12.33)38, 5.70 (2.30, 9.25) | −0.36 (−0.99, 0.28) | 0.269 | 0.59 (0.31, 1.11) | 0.104 |
|
| CCCTTT | 1277114 | 114, 6.05 (2.30, 14.55)68, 5.09 (−1.61, 9.40)14, 6.33 (2.77, 9.43) | −0.75 (−0.131, −0.18) | 0.010 | 0.45 (0.25, 0.81) | 0.007 |
|
| AAAGGG | 182283 | 171, 5.70 (−1.61, 14.55)25, 6.15 (3.49, 9.91)1, 3.37 (3.37, 3.37) | 0.34 (−0.49, 1.18) | 0.418 | 1.86 (0.80, 4.33) | 0.149 |
|
| CCCTTT | 1307112 | 120, 5.93 (−1.61, 14.55)65, 5.41 (0.69, 12.32)12, 5.67 (2.30, 9.25) | −0.48 (−1.05, 0.099) | 0.104 | 0.59 (0.33, 1.05) | 0.074 |
Linear regression for the association between CCR5 expression and CCR5 SNP/haplotype: Continuous outcome of placental expression. β: Beta coefficient, 95% CI: 95% Confidence Interval for the Beta, p: p-value.
Logistic regression for the association between CCR5 expression and CCR5 SNP/haplotype: Dichotomous outcome of high vs. low placental expression of CCR5 dichotomized at the median value. OR: Odds Ratio, 95% CI: 95% Confidence Interval for the Odds Ratio.
£ # Copies: Number of copies of haplotype: 0, 1, or 2 copies possible per subject. SNPs and haplotypes categorized as having one or more copies of the variant allele or haplotype compared to zero copies.
Figure 1Pattern of association between placental expression of heparan sulfate genes and CCR5.
Scatter Plots (left) and Predicted Linear Plots (right).
Linear regression for the associations between gene expression variables.
| Comparison | β (95% CI) |
|
|
| 0.27 (0.18, 0.35) | <0.0001 |
|
| 0.11 (0.06, 0.18) | <0.0001 |
Continuous placental gene expression variables compared via linear regression; β: Beta coefficient; 95% CI: 95% Confidence Interval for the Beta; p: p-value.
Association between CCR5 placental expression and the risk of HIV MTCT at different time points.
| Log %Change in Gene Expression | Intrauterine Transmission | Intrapartum Transmission | Postpartum Transmission | |||
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| |
| Medium low vs. Low | 1.06 (0.37, 3.04) | 0.907 | 1.11 (0.36, 3.42) | 0.862 | 1.15 (0.25, 5.22) | 0.853 |
| Medium high vs. Low | 1.02 (0.34, 3.02) | 0.974 | 1.88 (0.60, 5.96) | 0.280 | 0.21 (0.02, 2.18) | 0.190 |
| High vs. Low | 1.25 (0.42, 3.76) | 0.691 | 1.21 (0.36, 4.08) | 0.757 | 1.39 (0.28, 6.83) | 0.686 |
Logistic regression for association between CCR5 expression tertile and HIV MTCT (transmission vs. no transmission); OR: Odds Ratio; 95% CI: 95% Confidence Interval for the Odds Ratio; p: p-value.