Literature DB >> 20168331

Structural basis for the function of DEAH helicases.

Yangzi He1, Gregers R Andersen, Klaus H Nielsen.   

Abstract

DEAH helicases participate in pre-messenger RNA splicing and ribosome biogenesis. The structure of yeast Prp43p-ADP reveals the homology of DEAH helicases to DNA helicases and the presence of an oligonucleotide-binding motif. A beta-hairpin from the second RecA domain is wedged between two carboxy-terminal domains and blocks access to the occluded RNA binding site formed by the RecA domains and a C-terminal domain. ATP binding and hydrolysis are likely to induce conformational changes in the hairpin that are important for RNA unwinding or ribonucleoprotein remodelling. The structure of Prp43p provides the framework for functional and genetic analysis of all DEAH helicases.

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Year:  2010        PMID: 20168331      PMCID: PMC2838688          DOI: 10.1038/embor.2010.11

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  44 in total

Review 1.  Nucleic acid recognition by OB-fold proteins.

Authors:  Douglas L Theobald; Rachel M Mitton-Fry; Deborah S Wuttke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

Review 2.  The DEAD-box protein family of RNA helicases.

Authors:  Olivier Cordin; Josette Banroques; N Kyle Tanner; Patrick Linder
Journal:  Gene       Date:  2005-12-07       Impact factor: 3.688

Review 3.  Structural insights into the exon junction complex.

Authors:  Hervé Le Hir; Gregers Rom Andersen
Journal:  Curr Opin Struct Biol       Date:  2008-02       Impact factor: 6.809

4.  Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes.

Authors:  M Company; J Arenas; J Abelson
Journal:  Nature       Date:  1991-02-07       Impact factor: 49.962

5.  Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.

Authors:  Christian B F Andersen; Lionel Ballut; Jesper S Johansen; Hala Chamieh; Klaus H Nielsen; Cristiano L P Oliveira; Jan Skov Pedersen; Bertrand Séraphin; Hervé Le Hir; Gregers Rom Andersen
Journal:  Science       Date:  2006-08-24       Impact factor: 47.728

6.  The splicing ATPase prp43p is a component of multiple preribosomal particles.

Authors:  Simon Lebaron; Carine Froment; Micheline Fromont-Racine; Jean-Christophe Rain; Bernard Monsarrat; Michèle Caizergues-Ferrer; Yves Henry
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

7.  Helicase multitasking in ribosome assembly.

Authors:  Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

8.  Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis.

Authors:  Markus T Bohnsack; Roman Martin; Sander Granneman; Maike Ruprecht; Enrico Schleiff; David Tollervey
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

9.  A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis.

Authors:  B Schwer; C Guthrie
Journal:  EMBO J       Date:  1992-12       Impact factor: 11.598

Review 10.  DExD/H box RNA helicases: multifunctional proteins with important roles in transcriptional regulation.

Authors:  Frances V Fuller-Pace
Journal:  Nucleic Acids Res       Date:  2006-08-25       Impact factor: 16.971

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  60 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  The crystal structure of Mtr4 reveals a novel arch domain required for rRNA processing.

Authors:  Ryan N Jackson; A Alejandra Klauer; Bradley J Hintze; Howard Robinson; Ambro van Hoof; Sean J Johnson
Journal:  EMBO J       Date:  2010-05-28       Impact factor: 11.598

Review 3.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

4.  Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance.

Authors:  John R Weir; Fabien Bonneau; Jendrik Hentschel; Elena Conti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

5.  Utp14 Recruits and Activates the RNA Helicase Dhr1 To Undock U3 snoRNA from the Preribosome.

Authors:  Jieyi Zhu; Xin Liu; Margarida Anjos; Carl C Correll; Arlen W Johnson
Journal:  Mol Cell Biol       Date:  2016-01-04       Impact factor: 4.272

6.  RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex.

Authors:  Huijue Jia; Xuying Wang; James T Anderson; Eckhard Jankowsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

7.  Identification of DHX33 as a mediator of rRNA synthesis and cell growth.

Authors:  Yandong Zhang; Jason T Forys; Alexander P Miceli; Abigail S Gwinn; Jason D Weber
Journal:  Mol Cell Biol       Date:  2011-09-19       Impact factor: 4.272

Review 8.  Functions and regulation of the Brr2 RNA helicase during splicing.

Authors:  Eva Absmeier; Karine F Santos; Markus C Wahl
Journal:  Cell Cycle       Date:  2016-10-28       Impact factor: 4.534

9.  RNA helicase A activity is inhibited by oncogenic transcription factor EWS-FLI1.

Authors:  Hayriye Verda Erkizan; Jeffrey A Schneider; Kamal Sajwan; Garrett T Graham; Brittany Griffin; Sergey Chasovskikh; Sarah E Youbi; Abraham Kallarakal; Maksymilian Chruszcz; Radhakrishnan Padmanabhan; John L Casey; Aykut Üren; Jeffrey A Toretsky
Journal:  Nucleic Acids Res       Date:  2015-01-06       Impact factor: 16.971

10.  Comparative structural analysis of human DEAD-box RNA helicases.

Authors:  Patrick Schütz; Tobias Karlberg; Susanne van den Berg; Ruairi Collins; Lari Lehtiö; Martin Högbom; Lovisa Holmberg-Schiavone; Wolfram Tempel; Hee-Won Park; Martin Hammarström; Martin Moche; Ann-Gerd Thorsell; Herwig Schüler
Journal:  PLoS One       Date:  2010-09-30       Impact factor: 3.240

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