Literature DB >> 20161102

Variational Generation of Prismatic Boundary-Layer Meshes for Biomedical Computing.

Volodymyr Dyedov1, Daniel Einstein, Xiangmin Jiao, Andrew Kuprat, James Carson, Facundo Del Pin.   

Abstract

Boundary-layer meshes are important for numerical simulations in computational fluid dynamics, including computational biofluid dynamics of air flow in lungs and blood flow in hearts. Generating boundary-layer meshes is challenging for complex biological geometries. In this paper, we propose a novel technique for generating prismatic boundary-layer meshes for such complex geometries. Our method computes a feature size of the geometry, adapts the surface mesh based on the feature size, and then generates the prismatic layers by propagating the triangulated surface using the face-offsetting method. We derive a new variational method to optimize the prismatic layers to improve the triangle shapes and edge orthogonality of the prismatic elements and also introduce simple and effective measures to guarantee the validity of the mesh. Coupled with a high-quality tetrahedral mesh generator for the interior of the domain, our method generates high-quality hybrid meshes for accurate and efficient numerical simulations. We present comparative study to demonstrate the robustness and quality of our method for complex biomedical geometries.

Entities:  

Year:  2009        PMID: 20161102      PMCID: PMC2745959          DOI: 10.1002/nme.2583

Source DB:  PubMed          Journal:  Int J Numer Methods Eng        ISSN: 0029-5981            Impact factor:   3.477


  12 in total

1.  Comparison of blood particle deposition models for non-parallel flow domains.

Authors:  P Worth Longest; Clement Kleinstreuer
Journal:  J Biomech       Date:  2003-03       Impact factor: 2.712

Review 2.  Molecular basis of mechanical modulation of endothelial cell migration.

Authors:  Shu Chien; Song Li; Yan-Ting Shiu; Yi-Shuan Li
Journal:  Front Biosci       Date:  2005-05-01

3.  High-quality extraction of isosurfaces from regular and irregular grids.

Authors:  John Schreiner; Carlos E Scheidegger; Cláudio T Silva
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Sep-Oct       Impact factor: 4.579

4.  Wall shear stress gradient analysis within an idealized stenosis using non-Newtonian flow.

Authors:  Clemens M Schirmer; Adel M Malek
Journal:  Neurosurgery       Date:  2007-10       Impact factor: 4.654

5.  Computational analyses of a pressurized metered dose inhaler and a new drug-aerosol targeting methodology.

Authors:  Clement Kleinstreuer; Huawei Shi; Zhe Zhang
Journal:  J Aerosol Med       Date:  2007

6.  3D Finite Element Meshing from Imaging Data.

Authors:  Yongjie Zhang; Chandrajit Bajaj; Bong-Soo Sohn
Journal:  Comput Methods Appl Mech Eng       Date:  2005-11-15       Impact factor: 6.756

7.  Effects of flow patterns on the localization and expression of VE-cadherin at vascular endothelial cell junctions: in vivo and in vitro investigations.

Authors:  Hui Miao; Ying-Li Hu; Yan-Ting Shiu; Suli Yuan; Yihua Zhao; Roland Kaunas; Yingxiao Wang; Gang Jin; Shunichi Usami; Shu Chien
Journal:  J Vasc Res       Date:  2005-01-03       Impact factor: 1.934

8.  An anisotropic scale-invariant unstructured mesh generator suitable for volumetric imaging data.

Authors:  Andrew P Kuprat; Daniel R Einstein
Journal:  J Comput Phys       Date:  2009-02-20       Impact factor: 3.553

9.  The influence of hemodynamic forces on biomarkers in the walls of elastase-induced aneurysms in rabbits.

Authors:  Ramanathan Kadirvel; Yong-Hong Ding; Daying Dai; Hasballah Zakaria; Anne M Robertson; Mark A Danielson; Debra A Lewis; Harry J Cloft; David F Kallmes
Journal:  Neuroradiology       Date:  2007-09-20       Impact factor: 2.804

10.  Edge transformations for improving mesh quality of marching cubes.

Authors:  Carlos A Dietrich; Carlos E Scheidegger; John Schreiner; João L D Comba; Luciana P Nedel; Cláudio T Silva
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Jan-Feb       Impact factor: 4.579

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  4 in total

1.  Fluid-Structure Interactions of the Mitral Valve and Left Heart: Comprehensive Strategies, Past, Present and Future.

Authors:  Daniel R Einstein; Facundo Del Pin; Xiangmin Jiao; Andrew P Kuprat; James P Carson; Karyn S Kunzelman; Richard P Cochran; Julius M Guccione; Mark B Ratcliffe
Journal:  Int J Numer Methods Eng       Date:  2010-03       Impact factor: 3.477

2.  Comparative computational modeling of airflows and vapor dosimetry in the respiratory tracts of rat, monkey, and human.

Authors:  Richard A Corley; Senthil Kabilan; Andrew P Kuprat; James P Carson; Kevin R Minard; Richard E Jacob; Charles Timchalk; Robb Glenny; Sudhakar Pipavath; Timothy Cox; Christopher D Wallis; Richard F Larson; Michelle V Fanucchi; Edward M Postlethwait; Daniel R Einstein
Journal:  Toxicol Sci       Date:  2012-05-12       Impact factor: 4.849

3.  Adaptive generation of multimaterial grids from imaging data for biomedical Lagrangian fluid-structure simulations.

Authors:  James P Carson; Andrew P Kuprat; Xiangmin Jiao; Volodymyr Dyedov; Facundo Del Pin; Julius M Guccione; Mark B Ratcliffe; Daniel R Einstein
Journal:  Biomech Model Mechanobiol       Date:  2009-09-02

4.  Automatic identification and truncation of boundary outlets in complex imaging-derived biomedical geometries.

Authors:  Xiangmin Jiao; Daniel R Einstein; Vladimir Dyedov; James P Carson
Journal:  Med Biol Eng Comput       Date:  2009-06-13       Impact factor: 2.602

  4 in total

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