Literature DB >> 20158041

Concerted diffusion of lipids in raft-like membranes.

Touko Apajalahti1, Perttu Niemelä, Praveen Nedumpully Govindan, Markus S Miettinen, Emppu Salonen, Siewert-Jan Marrink, Ilpo Vattulainen.   

Abstract

Currently, there is no comprehensive model for the dynamics of cellular membranes. The understanding of even the basic dynamic processes, such as lateral diffusion of lipids, is still quite limited. Recent studies of one-component membrane systems have shown that instead of single-particle motions, the lateral diffusion is driven by a more complex, concerted mechanism for lipid diffusion (E. Falck et al., J. Am. Chem. Soc., 2008, 130, 44-45), where a lipid and its neighbors move in unison in terms of loosely defined clusters. In this work, we extend the previous study by considering the concerted lipid diffusion phenomena in many-component raft-like membranes. This nature of diffusion phenomena emerge in all the cases we have considered, including both atom-scale simulations of lateral diffusion within rafts and coarse-grained MARTINI simulations of diffusion in membranes characterized by coexistence of raft and non-raft domains. The data allows us to identify characteristic time scales for the concerted lipid motions, which turn out to range from hundreds of nanoseconds to several microseconds. Further, we characterize typical length scales associated with the correlated lipid diffusion patterns and find them to be about 10 nm, or even larger if weak correlations are taken into account. Finally, the concerted nature of lipid motions is also found in dissipative particle dynamics simulations of lipid membranes, clarifying the role of hydrodynamics (local momentum conservation) in membrane diffusion phenomena.

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Year:  2010        PMID: 20158041     DOI: 10.1039/b901487j

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  23 in total

1.  Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes.

Authors:  Brian A Camley; Michael G Lerner; Richard W Pastor; Frank L H Brown
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

2.  Interaction mechanism between the focused ultrasound and lipid membrane at the molecular level.

Authors:  Viet Hoang Man; Mai Suan Li; Junmei Wang; Philippe Derreumaux; Phuong H Nguyen
Journal:  J Chem Phys       Date:  2019-06-07       Impact factor: 3.488

3.  Transmembrane protein diffusion in gel-supported dual-leaflet membranes.

Authors:  Chih-Ying Wang; Reghan J Hill
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

4.  Self-consistent description of electrokinetic phenomena in particle-based simulations.

Authors:  Juan P Hernández-Ortiz; Juan J de Pablo
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

5.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

Review 6.  Binding equilibrium and kinetics of membrane-anchored receptors and ligands in cell adhesion: Insights from computational model systems and theory.

Authors:  Thomas R Weikl; Jinglei Hu; Guang-Kui Xu; Reinhard Lipowsky
Journal:  Cell Adh Migr       Date:  2016-06-13       Impact factor: 3.405

Review 7.  Lipid simulations: a perspective on lipids in action.

Authors:  Ilpo Vattulainen; Tomasz Rog
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

8.  Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model.

Authors:  Y Zenmei Ohkubo; Taras V Pogorelov; Mark J Arcario; Geoff A Christensen; Emad Tajkhorshid
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

9.  Extracting curvature preferences of lipids assembled in flat bilayers shows possible kinetic windows for genesis of bilayer asymmetry and domain formation in biological membranes.

Authors:  Suneyna Bansal; Aditya Mittal
Journal:  J Membr Biol       Date:  2013-06-22       Impact factor: 1.843

10.  Role of lipids in spheroidal high density lipoproteins.

Authors:  Timo Vuorela; Andrea Catte; Perttu S Niemelä; Anette Hall; Marja T Hyvönen; Siewert-Jan Marrink; Mikko Karttunen; Ilpo Vattulainen
Journal:  PLoS Comput Biol       Date:  2010-10-28       Impact factor: 4.475

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