Literature DB >> 20155730

Rapid detergent removal from peptide samples with ethyl acetate for mass spectrometry analysis.

Yee-Guide Yeung1, E Richard Stanley.   

Abstract

Detergents are required for the extraction of hydrophobic proteins and for the maintenance of their solubility in solution. However, the presence of detergents in the peptide samples severely suppresses ionization in mass spectrometry (MS) analysis and decreases chromatographic resolution in LC-MS. Thus, detergents must be removed for sensitive detection of peptides by MS. This unit describes a rapid protocol in which ethyl acetate extraction is used to remove octylglucoside from protease digests without loss of peptides. This procedure can also be used to reduce interference by sodium dodecyl sulfate, Nonidet P-40, or Triton X-100 in peptide samples for MS analysis.

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Year:  2010        PMID: 20155730      PMCID: PMC2852680          DOI: 10.1002/0471140864.ps1612s59

Source DB:  PubMed          Journal:  Curr Protoc Protein Sci        ISSN: 1934-3655


  10 in total

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Journal:  Proteomics       Date:  2006-01       Impact factor: 3.984

Review 2.  2D-LC/MS techniques for the identification of proteins in highly complex mixtures.

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Journal:  Expert Rev Proteomics       Date:  2004-06       Impact factor: 3.940

3.  Optimization of mass spectrometry-compatible surfactants for shotgun proteomics.

Authors:  Emily I Chen; Daniel Cociorva; Jeremy L Norris; John R Yates
Journal:  J Proteome Res       Date:  2007-05-27       Impact factor: 4.466

Review 4.  The biological impact of mass-spectrometry-based proteomics.

Authors:  Benjamin F Cravatt; Gabriel M Simon; John R Yates
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

5.  Improvement of in-gel digestion protocol for peptide mass fingerprinting by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  H Katayama; T Nagasu; Y Oda
Journal:  Rapid Commun Mass Spectrom       Date:  2001       Impact factor: 2.419

6.  Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-beta-D-maltoside as an additive for gel-based membrane proteomics.

Authors:  Hiroyuki Katayama; Tsuyoshi Tabata; Yasushi Ishihama; Toshitaka Sato; Yoshiya Oda; Takeshi Nagasu
Journal:  Rapid Commun Mass Spectrom       Date:  2004       Impact factor: 2.419

7.  Effects of common surfactants on protein digestion and matrix-assisted laser desorption/ionization mass spectrometric analysis of the digested peptides using two-layer sample preparation.

Authors:  Nan Zhang; Liang Li
Journal:  Rapid Commun Mass Spectrom       Date:  2004       Impact factor: 2.419

8.  Acid-labile surfactant improves in-sodium dodecyl sulfate polyacrylamide gel protein digestion for matrix-assisted laser desorption/ionization mass spectrometric peptide mapping.

Authors:  Eiko Nomura; Kazuhiro Katsuta; Tomoko Ueda; Michinori Toriyama; Tatsuya Mori; Naoyuki Inagaki
Journal:  J Mass Spectrom       Date:  2004-02       Impact factor: 1.982

9.  Removal of detergents from protein digests for mass spectrometry analysis.

Authors:  Yee-Guide Yeung; Edward Nieves; Ruth Hogue Angeletti; E Richard Stanley
Journal:  Anal Biochem       Date:  2008-08-03       Impact factor: 3.365

10.  Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis.

Authors:  Takeshi Masuda; Masaru Tomita; Yasushi Ishihama
Journal:  J Proteome Res       Date:  2008-02       Impact factor: 4.466

  10 in total
  25 in total

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Journal:  Elife       Date:  2019-07-31       Impact factor: 8.140

2.  Primary Human Natural Killer Cells Retain Proinflammatory IgG1 at the Cell Surface and Express CD16a Glycoforms with Donor-dependent Variability.

Authors:  Kashyap R Patel; Joel D Nott; Adam W Barb
Journal:  Mol Cell Proteomics       Date:  2019-08-29       Impact factor: 5.911

3.  Novel, gel-free proteomics approach identifies RNF5 and JAMP as modulators of GPCR stability.

Authors:  Sébastien J Roy; Irina Glazkova; Louis Fréchette; Christian Iorio-Morin; Chantal Binda; Darlaine Pétrin; Phan Trieu; Mélanie Robitaille; Stéphane Angers; Terence E Hébert; Jean-Luc Parent
Journal:  Mol Endocrinol       Date:  2013-06-24

4.  Lys05 - A Promising Autophagy Inhibitor in the Radiosensitization Battle: Phosphoproteomic Perspective.

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5.  The Early Dendritic Cell Signaling Induced by Virulent Francisella tularensis Strain Occurs in Phases and Involves the Activation of Extracellular Signal-Regulated Kinases (ERKs) and p38 In the Later Stage.

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Journal:  Mol Cell Proteomics       Date:  2017-10-18       Impact factor: 5.911

6.  Nano-liquid Chromatography-orbitrap MS-based Quantitative Proteomics Reveals Differences Between the Mechanisms of Action of Carnosic Acid and Carnosol in Colon Cancer Cells.

Authors:  Alberto Valdés; Virginia García-Cañas; Konstantin A Artemenko; Carolina Simó; Jonas Bergquist; Alejandro Cifuentes
Journal:  Mol Cell Proteomics       Date:  2016-11-10       Impact factor: 5.911

7.  Inflammation-Induced Citrullinated Glucose-Regulated Protein 78 Elicits Immune Responses in Human Type 1 Diabetes.

Authors:  Mijke Buitinga; Aïsha Callebaut; Fernanda Marques Câmara Sodré; Inne Crèvecoeur; Gabriele Blahnik-Fagan; Mei-Ling Yang; Marco Bugliani; David Arribas-Layton; Meghan Marré; Dana P Cook; Etienne Waelkens; Roberto Mallone; Jon D Piganelli; Piero Marchetti; Mark J Mamula; Rita Derua; Eddie A James; Chantal Mathieu; Lut Overbergh
Journal:  Diabetes       Date:  2018-11       Impact factor: 9.461

8.  Proteomic Detection and Validation of Translated Small Open Reading Frames.

Authors:  Alexandra Khitun; Sarah A Slavoff
Journal:  Curr Protoc Chem Biol       Date:  2019-12

9.  Site-specific N-glycan Analysis of Antibody-binding Fc γ Receptors from Primary Human Monocytes.

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Journal:  Mol Cell Proteomics       Date:  2019-12-30       Impact factor: 5.911

10.  Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana.

Authors:  Johanna Krahmer; Matthew M Hindle; Sarah F Martin; Thierry Le Bihan; Andrew J Millar
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

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