Literature DB >> 20152138

Transcriptional memory: staying in the loop.

Jason H Brickner1.   

Abstract

Actively transcribed genes are organized into loops in which the 5' and 3' ends of the gene physically associate. Two new papers show that gene looping can persist after genes are repressed, promoting rapid reactivation of transcription, a phenomenon known as transcriptional memory. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID： 20152138     DOI： 10.1016/j.cub.2009.11.013

Source DB:  PubMed          Journal:  Curr Biol        ISSN： 0960-9822            Impact factor:   10.834


  13 in total

Review 1.  Epigenetic memories: structural marks or active circuits?

Authors:  Floriane Nicol-Benoît; Pascale Le-Goff; Yves Le-Dréan; Florence Demay; Farzad Pakdel; Gilles Flouriot; Denis Michel
Journal:  Cell Mol Life Sci       Date:  2012-02-14       Impact factor: 9.261

Review 2.  Transcription goes digital.

Authors:  Timothée Lionnet; Robert H Singer
Journal:  EMBO Rep       Date:  2012-04-02       Impact factor: 8.807

3.  Interferon stimulation creates chromatin marks and establishes transcriptional memory.

Authors:  Rui Kamada; Wenjing Yang; Yubo Zhang; Mira C Patel; Yanqin Yang; Ryota Ouda; Anup Dey; Yoshiyuki Wakabayashi; Kazuyasu Sakaguchi; Takashi Fujita; Tomohiko Tamura; Jun Zhu; Keiko Ozato
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-10       Impact factor: 11.205

Review 4.  Major Determinants of Nucleosome Positioning.

Authors:  Răzvan V Chereji; David J Clark
Journal:  Biophys J       Date:  2018-04-06       Impact factor: 4.033

5.  Role of nucleosome positioning in 3D chromatin organization and loop formation.

Authors:  Hungyo Kharerin; Paike J Bhat; Ranjith Padinhateeri
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

6.  A dynamic model of transcriptional imprinting derived from the vitellogenesis memory effect.

Authors:  Floriane Nicol-Benoit; Axelle Amon; Colette Vaillant; Pascale le Goff; Yves le Dréan; Farzad Pakdel; Gilles Flouriot; Yves Valotaire; Denis Michel
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

7.  Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory.

Authors:  William H Light; Donna G Brickner; Veronica R Brand; Jason H Brickner
Journal:  Mol Cell       Date:  2010-10-08       Impact factor: 17.970

8.  Transition between fermentation and respiration determines history-dependent behavior in fluctuating carbon sources.

Authors:  Bram Cerulus; Abbas Jariani; Gemma Perez-Samper; Lieselotte Vermeersch; Julian Mj Pietsch; Matthew M Crane; Aaron M New; Brigida Gallone; Miguel Roncoroni; Maria C Dzialo; Sander K Govers; Jhana O Hendrickx; Eva Galle; Maarten Coomans; Pieter Berden; Sara Verbandt; Peter S Swain; Kevin J Verstrepen
Journal:  Elife       Date:  2018-10-09       Impact factor: 8.140

9.  Fractional dynamics of globally slow transcription and its impact on deterministic genetic oscillation.

Authors:  Kun Wei; Shilong Gao; Suchuan Zhong; Hong Ma
Journal:  PLoS One       Date:  2012-06-05       Impact factor: 3.240

10.  Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription.

Authors:  Cedric Cagliero; Ralph S Grand; M Beatrix Jones; Ding J Jin; Justin M O'Sullivan
Journal:  Nucleic Acids Res       Date:  2013-04-30       Impact factor: 16.971
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