Literature DB >> 20150102

Computational image analysis of cellular dynamics: a case study based on particle tracking.

Khuloud Jaqaman, Gaudenz Danuser.   

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Year:  2009        PMID： 20150102      PMCID： PMC3155779          DOI： 10.1101/pdb.top65

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN： 1559-6095


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  38 in total

1.  Tracking quasi-stationary flow of weak fluorescent signals by adaptive multi-frame correlation.

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2.  High-throughput RNAi screening by time-lapse imaging of live human cells.

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3.  Analysis of transient behavior in complex trajectories: application to secretory vesicle dynamics.

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Review 4.  Quantitative fluorescent speckle microscopy of cytoskeleton dynamics.

Authors:  Gaudenz Danuser; Clare M Waterman-Storer
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

Review 5.  Automated interpretation of protein subcellular location patterns.

Authors:  Xiang Chen; Robert F Murphy
Journal:  Int Rev Cytol       Date:  2006

6.  Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells.

Authors:  Victor Racine; Martin Sachse; Jean Salamero; Vincent Fraisier; Alain Trubuil; Jean-Baptiste Sibarita
Journal:  J Microsc       Date:  2007-03       Impact factor: 1.758

7.  Quantitative morphological signatures define local signaling networks regulating cell morphology.

Authors:  Chris Bakal; John Aach; George Church; Norbert Perrimon
Journal:  Science       Date:  2007-06-22       Impact factor: 47.728

Review 8.  Intracellular objects tracking.

Authors:  Yannis Kalaidzidis
Journal:  Eur J Cell Biol       Date:  2007-07-23       Impact factor: 4.492

9.  Multicolor super-resolution imaging with photo-switchable fluorescent probes.

Authors:  Mark Bates; Bo Huang; Graham T Dempsey; Xiaowei Zhuang
Journal:  Science       Date:  2007-08-16       Impact factor: 47.728

10.  Tracking molecular particles in live cells using fuzzy rule-based system.

Authors:  Shan Jiang; Xiaobo Zhou; Tom Kirchhausen; Stephen T C Wong
Journal:  Cytometry A       Date:  2007-08       Impact factor: 4.355
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  14 in total

1.  Analysis of video-based microscopic particle trajectories using Kalman filtering.

Authors:  Pei-Hsun Wu; Ashutosh Agarwal; Henry Hess; Pramod P Khargonekar; Yiider Tseng
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

2.  plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics.

Authors:  Kathryn T Applegate; Sebastien Besson; Alexandre Matov; Maria H Bagonis; Khuloud Jaqaman; Gaudenz Danuser
Journal:  J Struct Biol       Date:  2011-07-29       Impact factor: 2.867

3.  Interactive, computer-assisted tracking of speckle trajectories in fluorescence microscopy: application to actin polymerization and membrane fusion.

Authors:  Matthew B Smith; Erdem Karatekin; Andrea Gohlke; Hiroaki Mizuno; Naoki Watanabe; Dimitrios Vavylonis
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

4.  Object tracking with particle filtering in fluorescence microscopy images: application to the motion of neurofilaments in axons.

Authors:  Liang Yuan; Yuan F Zheng; Junda Zhu; Lina Wang; A Brown
Journal:  IEEE Trans Med Imaging       Date:  2011-08-22       Impact factor: 10.048

Review 5.  Image analysis in fluorescence microscopy: bacterial dynamics as a case study.

Authors:  Sven van Teeffelen; Joshua W Shaevitz; Zemer Gitai
Journal:  Bioessays       Date:  2012-03-13       Impact factor: 4.345

6.  Uncertainty Footprint: Visualization of Nonuniform Behavior of Iterative Algorithms Applied to 4D Cell Tracking.

Authors:  Y Wan; C Hansen
Journal:  Comput Graph Forum       Date:  2017-07-04       Impact factor: 2.078

7.  Objective comparison of particle tracking methods.

Authors:  Nicolas Chenouard; Ihor Smal; Fabrice de Chaumont; Martin Maška; Ivo F Sbalzarini; Yuanhao Gong; Janick Cardinale; Craig Carthel; Stefano Coraluppi; Mark Winter; Andrew R Cohen; William J Godinez; Karl Rohr; Yannis Kalaidzidis; Liang Liang; James Duncan; Hongying Shen; Yingke Xu; Klas E G Magnusson; Joakim Jaldén; Helen M Blau; Perrine Paul-Gilloteaux; Philippe Roudot; Charles Kervrann; François Waharte; Jean-Yves Tinevez; Spencer L Shorte; Joost Willemse; Katherine Celler; Gilles P van Wezel; Han-Wei Dan; Yuh-Show Tsai; Carlos Ortiz de Solórzano; Jean-Christophe Olivo-Marin; Erik Meijering
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547

Review 8.  Imaging live cells at the nanometer-scale with single-molecule microscopy: obstacles and achievements in experiment optimization for microbiology.

Authors:  Beth L Haas; Jyl S Matson; Victor J DiRita; Julie S Biteen
Journal:  Molecules       Date:  2014-08-13       Impact factor: 4.411

9.  A quantitative comparison of single-dye tracking analysis tools using Monte Carlo simulations.

Authors:  Laura Weimann; Kristina A Ganzinger; James McColl; Kate L Irvine; Simon J Davis; Nicholas J Gay; Clare E Bryant; David Klenerman
Journal:  PLoS One       Date:  2013-05-30       Impact factor: 3.240

10.  α-SNAP regulates dynamic, on-site assembly and calcium selectivity of Orai1 channels.

Authors:  Peiyao Li; Yong Miao; Adish Dani; Monika Vig
Journal:  Mol Biol Cell       Date:  2016-06-22       Impact factor: 4.138
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