Literature DB >> 20148029

Ancient human genome sequence of an extinct Palaeo-Eskimo.

Morten Rasmussen1, Yingrui Li, Stinus Lindgreen, Jakob Skou Pedersen, Anders Albrechtsen, Ida Moltke, Mait Metspalu, Ene Metspalu, Toomas Kivisild, Ramneek Gupta, Marcelo Bertalan, Kasper Nielsen, M Thomas P Gilbert, Yong Wang, Maanasa Raghavan, Paula F Campos, Hanne Munkholm Kamp, Andrew S Wilson, Andrew Gledhill, Silvana Tridico, Michael Bunce, Eline D Lorenzen, Jonas Binladen, Xiaosen Guo, Jing Zhao, Xiuqing Zhang, Hao Zhang, Zhuo Li, Minfeng Chen, Ludovic Orlando, Karsten Kristiansen, Mads Bak, Niels Tommerup, Christian Bendixen, Tracey L Pierre, Bjarne Grønnow, Morten Meldgaard, Claus Andreasen, Sardana A Fedorova, Ludmila P Osipova, Thomas F G Higham, Christopher Bronk Ramsey, Thomas V O Hansen, Finn C Nielsen, Michael H Crawford, Søren Brunak, Thomas Sicheritz-Pontén, Richard Villems, Rasmus Nielsen, Anders Krogh, Jun Wang, Eske Willerslev.   

Abstract

We report here the genome sequence of an ancient human. Obtained from approximately 4,000-year-old permafrost-preserved hair, the genome represents a male individual from the first known culture to settle in Greenland. Sequenced to an average depth of 20x, we recover 79% of the diploid genome, an amount close to the practical limit of current sequencing technologies. We identify 353,151 high-confidence single-nucleotide polymorphisms (SNPs), of which 6.8% have not been reported previously. We estimate raw read contamination to be no higher than 0.8%. We use functional SNP assessment to assign possible phenotypic characteristics of the individual that belonged to a culture whose location has yielded only trace human remains. We compare the high-confidence SNPs to those of contemporary populations to find the populations most closely related to the individual. This provides evidence for a migration from Siberia into the New World some 5,500 years ago, independent of that giving rise to the modern Native Americans and Inuit.

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Year:  2010        PMID: 20148029      PMCID: PMC3951495          DOI: 10.1038/nature08835

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  33 in total

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Journal:  Nature       Date:  2003-06-19       Impact factor: 49.962

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Review 4.  Ancient DNA.

Authors:  Eske Willerslev; Alan Cooper
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Journal:  Nature       Date:  2006-11-16       Impact factor: 49.962

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10.  Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.

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Journal:  Science       Date:  2009-11-05       Impact factor: 47.728

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  254 in total

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Journal:  Nat Biotechnol       Date:  2011-12-18       Impact factor: 54.908

2.  The existence of species rests on a metastable equilibrium between inbreeding and outbreeding. An essay on the close relationship between speciation, inbreeding and recessive mutations.

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3.  Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia.

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Journal:  Am J Hum Genet       Date:  2011-12-09       Impact factor: 11.025

4.  Evaluating the impact of post-mortem damage in ancient DNA: a theoretical approach.

Authors:  Martyna Molak; Simon Y W Ho
Journal:  J Mol Evol       Date:  2011-11-20       Impact factor: 2.395

5.  New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing.

Authors:  Andreas Keller; Angela Graefen; Markus Ball; Mark Matzas; Valesca Boisguerin; Frank Maixner; Petra Leidinger; Christina Backes; Rabab Khairat; Michael Forster; Björn Stade; Andre Franke; Jens Mayer; Jessica Spangler; Stephen McLaughlin; Minita Shah; Clarence Lee; Timothy T Harkins; Alexander Sartori; Andres Moreno-Estrada; Brenna Henn; Martin Sikora; Ornella Semino; Jacques Chiaroni; Siiri Rootsi; Natalie M Myres; Vicente M Cabrera; Peter A Underhill; Carlos D Bustamante; Eduard Egarter Vigl; Marco Samadelli; Giovanna Cipollini; Jan Haas; Hugo Katus; Brian D O'Connor; Marc R J Carlson; Benjamin Meder; Nikolaus Blin; Eckart Meese; Carsten M Pusch; Albert Zink
Journal:  Nat Commun       Date:  2012-02-28       Impact factor: 14.919

6.  Beyond the palaeomicrobiology.

Authors:  Helena Seth-Smith
Journal:  Nat Rev Microbiol       Date:  2012-03-12       Impact factor: 60.633

7.  Kaviar: an accessible system for testing SNV novelty.

Authors:  Gustavo Glusman; Juan Caballero; Denise E Mauldin; Leroy Hood; Jared C Roach
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8.  Ancient DNA set to rewrite human history.

Authors:  Rex Dalton
Journal:  Nature       Date:  2010-05-13       Impact factor: 49.962

9.  Human evolution: stranger from Siberia.

Authors:  Terence A Brown
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

10.  Rule poses threat to museum bones.

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Journal:  Nature       Date:  2010-04-01       Impact factor: 49.962

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