Literature DB >> 20139423

Snf1 dependence of peroxisomal gene expression is mediated by Adr1.

Sooraj Ratnakumar1, Elton T Young.   

Abstract

Eukaryotes utilize fatty acids by beta-oxidation, which occurs in the mitochondria and peroxisomes in higher organisms and in the peroxisomes in yeast. The AMP-activated protein kinase regulates this process in mammalian cells, and its homolog Snf1, together with the transcription factors Adr1, Oaf1, and Pip2, regulates peroxisome proliferation and beta-oxidation in yeast. A constitutive allele of Adr1 (Adr1(c)) lacking the glucose- and Snf1-regulated phosphorylation substrate Ser-230 was found to be Snf1-independent for regulation of peroxisomal genes. In addition, it could compensate for and even suppress the requirement for Oaf1 or Pip2 for gene induction. Peroxisomal genes were found to be regulated by oleate in the presence of glucose, as long as Adr1(c) was expressed, suggesting that the Oaf1/Pip2 heterodimer is Snf1-independent. Consistent with this observation, Oaf1 binding to promoters in the presence of oleate was not reduced in a snf1Delta strain. Exploring the mechanism by which Adr1(c) permits Snf1-independent peroxisomal gene induction, we found that strength of promoter binding did not correlate with transcription, suggesting that stable binding is not a prerequisite for enhanced transcription. Instead, enhanced transcriptional activation and suppression of Oaf1, Pip2, and Snf1 by Adr1(c) may be related to the ability of Adr1(c) to suppress the requirement for and enhance the recruitment of transcriptional coactivators in a promoter- and growth medium-dependent manner.

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Year:  2010        PMID: 20139423      PMCID: PMC2856278          DOI: 10.1074/jbc.M109.079848

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  56 in total

1.  A novel element in the promoter of the Saccharomyces cerevisiae gene SPS19 enhances ORE-dependent up-regulation in oleic acid and is essential for de-repression.

Authors:  A Gurvitz; B Hamilton; A Hartig; H Ruis; I W Dawes; H Rottensteiner
Journal:  Mol Gen Genet       Date:  1999-10

2.  Hyperacetylation of chromatin at the ADH2 promoter allows Adr1 to bind in repressed conditions.

Authors:  Loredana Verdone; Jiansheng Wu; Kristen van Riper; Nataly Kacherovsky; Maria Vogelauer; Elton T Young; Michael Grunstein; Ernesto Di Mauro; Micaela Caserta
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

3.  Saccharomyces cerevisiae Adr1p governs fatty acid beta-oxidation and peroxisome proliferation by regulating POX1 and PEX11.

Authors:  A Gurvitz; J K Hiltunen; R Erdmann; B Hamilton; A Hartig; H Ruis; H Rottensteiner
Journal:  J Biol Chem       Date:  2001-06-28       Impact factor: 5.157

4.  Saccharomyces cerevisiae Pip2p-Oaf1p regulates PEX25 transcription through an adenine-less ORE.

Authors:  Hanspeter Rottensteiner; Andreas Hartig; Barbara Hamilton; Helmut Ruis; Ralf Erdmann; Aner Gurvitz
Journal:  Eur J Biochem       Date:  2003-05

5.  Adr1 and Cat8 synergistically activate the glucose-regulated alcohol dehydrogenase gene ADH2 of the yeast Saccharomyces cerevisiae.

Authors:  Kristin Walther; Hans-Joachim Schüller
Journal:  Microbiology       Date:  2001-08       Impact factor: 2.777

6.  Snf1 protein kinase regulates Adr1 binding to chromatin but not transcription activation.

Authors:  Elton T Young; Nataly Kacherovsky; Kristen Van Riper
Journal:  J Biol Chem       Date:  2002-08-06       Impact factor: 5.157

7.  Snf1 controls the activity of adr1 through dephosphorylation of Ser230.

Authors:  Sooraj Ratnakumar; Nataly Kacherovsky; Erin Arms; Elton T Young
Journal:  Genetics       Date:  2009-04-27       Impact factor: 4.562

Review 8.  The biochemistry of peroxisomal beta-oxidation in the yeast Saccharomyces cerevisiae.

Authors:  J Kalervo Hiltunen; Anu M Mursula; Hanspeter Rottensteiner; Rik K Wierenga; Alexander J Kastaniotis; Aner Gurvitz
Journal:  FEMS Microbiol Rev       Date:  2003-04       Impact factor: 16.408

9.  Transcriptional regulatory networks in Saccharomyces cerevisiae.

Authors:  Tong Ihn Lee; Nicola J Rinaldi; François Robert; Duncan T Odom; Ziv Bar-Joseph; Georg K Gerber; Nancy M Hannett; Christopher T Harbison; Craig M Thompson; Itamar Simon; Julia Zeitlinger; Ezra G Jennings; Heather L Murray; D Benjamin Gordon; Bing Ren; John J Wyrick; Jean-Bosco Tagne; Thomas L Volkert; Ernest Fraenkel; David K Gifford; Richard A Young
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

10.  Transcriptome profiling to identify genes involved in peroxisome assembly and function.

Authors:  Jennifer J Smith; Marcello Marelli; Rowan H Christmas; Franco J Vizeacoumar; David J Dilworth; Trey Ideker; Timothy Galitski; Krassen Dimitrov; Richard A Rachubinski; John D Aitchison
Journal:  J Cell Biol       Date:  2002-07-22       Impact factor: 10.539

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  26 in total

Review 1.  The peroxisome: an update on mysteries.

Authors:  Markus Islinger; Sandra Grille; H Dariush Fahimi; Michael Schrader
Journal:  Histochem Cell Biol       Date:  2012-03-14       Impact factor: 4.304

2.  Snf1/AMPK regulates Gcn5 occupancy, H3 acetylation and chromatin remodelling at S. cerevisiae ADY2 promoter.

Authors:  Georgia Abate; Emanuela Bastonini; Katherine A Braun; Loredana Verdone; Elton T Young; Micaela Caserta
Journal:  Biochim Biophys Acta       Date:  2012-01-28

Review 3.  Ask yeast how to burn your fats: lessons learned from the metabolic adaptation to salt stress.

Authors:  Amparo Pascual-Ahuir; Sara Manzanares-Estreder; Alba Timón-Gómez; Markus Proft
Journal:  Curr Genet       Date:  2017-06-19       Impact factor: 3.886

4.  PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data.

Authors:  Wei-Ming Chen; Samuel A Danziger; Jung-Hsien Chiang; John D Aitchison
Journal:  Bioinformatics       Date:  2013-07-05       Impact factor: 6.937

Review 5.  Nutritional control of growth and development in yeast.

Authors:  James R Broach
Journal:  Genetics       Date:  2012-09       Impact factor: 4.562

6.  Pichia pastoris 14-3-3 regulates transcriptional activity of the methanol inducible transcription factor Mxr1 by direct interaction.

Authors:  Pabitra K Parua; Paul M Ryan; Kayla Trang; Elton T Young
Journal:  Mol Microbiol       Date:  2012-06-12       Impact factor: 3.501

7.  Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast.

Authors:  Pramote Chumnanpuen; Jie Zhang; Intawat Nookaew; Jens Nielsen
Journal:  Mol Genet Genomics       Date:  2012-05-24       Impact factor: 3.291

8.  Repression of multiple CYP2D genes in mouse primary hepatocytes with a single siRNA construct.

Authors:  Omaima Elraghy; William S Baldwin
Journal:  In Vitro Cell Dev Biol Anim       Date:  2014-08-15       Impact factor: 2.416

9.  The stress-regulatory transcription factors Msn2 and Msn4 regulate fatty acid oxidation in budding yeast.

Authors:  Praveen Kumar Rajvanshi; Madhuri Arya; Ram Rajasekharan
Journal:  J Biol Chem       Date:  2017-09-18       Impact factor: 5.157

10.  14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae.

Authors:  Katherine A Braun; Pabitra K Parua; Kenneth M Dombek; Gregory E Miner; Elton T Young
Journal:  Mol Cell Biol       Date:  2012-12-03       Impact factor: 4.272

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