Literature DB >> 20135282

Analysis of the degradome with the CLIP-CHIP microarray.

Reinhild Kappelhoff1, Ulrich Auf dem Keller, Christopher M Overall.   

Abstract

The degradome microarray - CLIP-CHIP - is a dedicated and focused array that allows the analysis of all proteases, non-proteolytic homologs, and protease inhibitor gene transcripts in the human and murine genomes at the mRNA transcript level.Based on unique 70-mer oligonucleotides, designed to match parts of the sequence of known or predicted protease and inhibitor mRNAs in both species and printed on a glass-matrix surface, the CLIP-CHIP microarray can be used to analyze differentially expressed protease and inhibitor gene products and give expression profiles for any analyzed sample.

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Year:  2010        PMID： 20135282     DOI： 10.1007/978-1-60327-299-5_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  8 in total

1.  Live-Cell Imaging of Protease Activity: Assays to Screen Therapeutic Approaches.

Authors:  Anita Chalasani; Kyungmin Ji; Mansoureh Sameni; Samia H Mazumder; Yong Xu; Kamiar Moin; Bonnie F Sloane
Journal:  Methods Mol Biol       Date:  2017

2.  Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation.

Authors:  Ulrich auf dem Keller; Anna Prudova; Ulrich Eckhard; Barbara Fingleton; Christopher M Overall
Journal:  Sci Signal       Date:  2013-01-15       Impact factor: 8.192

3.  Microarray and proteomic analysis of breast cancer cell and osteoblast co-cultures: role of osteoblast matrix metalloproteinase (MMP)-13 in bone metastasis.

Authors:  Charlotte Morrison; Stephanie Mancini; Jane Cipollone; Reinhild Kappelhoff; Calvin Roskelley; Christopher Overall
Journal:  J Biol Chem       Date:  2011-07-22       Impact factor: 5.157

4.  Network analyses reveal pervasive functional regulation between proteases in the human protease web.

Authors:  Nikolaus Fortelny; Jennifer H Cox; Reinhild Kappelhoff; Amanda E Starr; Philipp F Lange; Paul Pavlidis; Christopher M Overall
Journal:  PLoS Biol       Date:  2014-05-27       Impact factor: 8.029

5.  Persistent Salmonella enterica Serovar Typhimurium Infection Induces Protease Expression During Intestinal Fibrosis.

Authors:  Katrin Ehrhardt; Natalie Steck; Reinhild Kappelhoff; Stephanie Stein; Florian Rieder; Ilyssa O Gordon; Erin C Boyle; Peter Braubach; Christopher M Overall; B Brett Finlay; Guntram A Grassl
Journal:  Inflamm Bowel Dis       Date:  2019-09-18       Impact factor: 5.325

6.  The peri-islet basement membrane, a barrier to infiltrating leukocytes in type 1 diabetes in mouse and human.

Authors:  Éva Korpos; Nadir Kadri; Reinhild Kappelhoff; Jeannine Wegner; Christopher M Overall; Ekkehard Weber; Dan Holmberg; Susanna Cardell; Lydia Sorokin
Journal:  Diabetes       Date:  2012-11-08       Impact factor: 9.461

7.  Cleavage specificity analysis of six type II transmembrane serine proteases (TTSPs) using PICS with proteome-derived peptide libraries.

Authors:  Olivier Barré; Antoine Dufour; Ulrich Eckhard; Reinhild Kappelhoff; François Béliveau; Richard Leduc; Christopher M Overall
Journal:  PLoS One       Date:  2014-09-11       Impact factor: 3.240

8.  TAILS N-terminomic and proteomic datasets of healthy human dental pulp.

Authors:  Ulrich Eckhard; Giada Marino; Simon R Abbey; Ian Matthew; Christopher M Overall
Journal:  Data Brief       Date:  2015-10-16
  8 in total

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