Literature DB >> 20131763

Potential energy surfaces fitted by artificial neural networks.

Chris M Handley1, Paul L A Popelier.   

Abstract

Molecular mechanics is the tool of choice for the modeling of systems that are so large or complex that it is impractical or impossible to model them by ab initio methods. For this reason there is a need for accurate potentials that are able to quickly reproduce ab initio quality results at the fraction of the cost. The interactions within force fields are represented by a number of functions. Some interactions are well understood and can be represented by simple mathematical functions while others are not so well understood and their functional form is represented in a simplistic manner or not even known. In the last 20 years there have been the first examples of a new design ethic, where novel and contemporary methods using machine learning, in particular, artificial neural networks, have been used to find the nature of the underlying functions of a force field. Here we appraise what has been achieved over this time and what requires further improvements, while offering some insight and guidance for the development of future force fields.

Mesh:

Year:  2010        PMID: 20131763     DOI: 10.1021/jp9105585

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  17 in total

1.  Molecular Dynamics Simulations with Quantum Mechanics/Molecular Mechanics and Adaptive Neural Networks.

Authors:  Lin Shen; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2018-02-26       Impact factor: 6.006

2.  Multiscale Quantum Mechanics/Molecular Mechanics Simulations with Neural Networks.

Authors:  Lin Shen; Jingheng Wu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2016-09-06       Impact factor: 6.006

3.  Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles.

Authors:  Christophe Narth; Louis Lagardère; Étienne Polack; Nohad Gresh; Qiantao Wang; David R Bell; Joshua A Rackers; Jay W Ponder; Pengyu Y Ren; Jean-Philip Piquemal
Journal:  J Comput Chem       Date:  2016-02-15       Impact factor: 3.376

4.  Machine learning estimates of natural product conformational energies.

Authors:  Matthias Rupp; Matthias R Bauer; Rainer Wilcken; Andreas Lange; Michael Reutlinger; Frank M Boeckler; Gisbert Schneider
Journal:  PLoS Comput Biol       Date:  2014-01-16       Impact factor: 4.475

5.  Machine learning molecular dynamics for the simulation of infrared spectra.

Authors:  Michael Gastegger; Jörg Behler; Philipp Marquetand
Journal:  Chem Sci       Date:  2017-08-10       Impact factor: 9.825

6.  Direct Learning Hidden Excited State Interaction Patterns from ab initio Dynamics and Its Implication as Alternative Molecular Mechanism Models.

Authors:  Fang Liu; Likai Du; Dongju Zhang; Jun Gao
Journal:  Sci Rep       Date:  2017-08-18       Impact factor: 4.379

7.  Discovering charge density functionals and structure-property relationships with PROPhet: A general framework for coupling machine learning and first-principles methods.

Authors:  Brian Kolb; Levi C Lentz; Alexie M Kolpak
Journal:  Sci Rep       Date:  2017-04-26       Impact factor: 4.379

8.  ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost.

Authors:  J S Smith; O Isayev; A E Roitberg
Journal:  Chem Sci       Date:  2017-02-08       Impact factor: 9.825

Review 9.  Machine learning for molecular and materials science.

Authors:  Keith T Butler; Daniel W Davies; Hugh Cartwright; Olexandr Isayev; Aron Walsh
Journal:  Nature       Date:  2018-07-25       Impact factor: 49.962

10.  Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems.

Authors:  John A Keith; Valentin Vassilev-Galindo; Bingqing Cheng; Stefan Chmiela; Michael Gastegger; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 60.622

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