Literature DB >> 20129461

The hare and the tortoise: one small step for four SNPs, one giant leap for SNP-kind.

Yali Xue1, Chris Tyler-Smith.   

Abstract

A recently published study has used next-gen sequencing technology to resequence two Y chromosomes separated by 13 generations and discovered four single-base differences in approximately 10Mb DNA, suggesting that the Y chromosome euchromatin accumulates around one mutation per generation. Y-SNPs therefore now offer the best resolution of Y haplotypes and promise to distinguish almost every Y chromosome. This work illustrates the promise of current sequencing technology for forensically relevant applications.

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Year:  2009        PMID: 20129461      PMCID: PMC3312576          DOI: 10.1016/j.fsigen.2009.08.005

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  9 in total

1.  A comprehensive survey of human Y-chromosomal microsatellites.

Authors:  Manfred Kayser; Ralf Kittler; Axel Erler; Minttu Hedman; Andrew C Lee; Aisha Mohyuddin; S Qasim Mehdi; Zoë Rosser; Mark Stoneking; Mark A Jobling; Antti Sajantila; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2004-06       Impact factor: 11.025

Review 2.  Encoded evidence: DNA in forensic analysis.

Authors:  Mark A Jobling; Peter Gill
Journal:  Nat Rev Genet       Date:  2004-10       Impact factor: 53.242

Review 3.  The impact of next-generation sequencing technology on genetics.

Authors:  Elaine R Mardis
Journal:  Trends Genet       Date:  2008-02-11       Impact factor: 11.639

4.  Y chromosome haplotype reference database (YHRD): update.

Authors:  Sascha Willuweit; Lutz Roewer
Journal:  Forensic Sci Int Genet       Date:  2007-03-02       Impact factor: 4.882

5.  Jefferson fathered slave's last child.

Authors:  E A Foster; M A Jobling; P G Taylor; P Donnelly; P de Knijff; R Mieremet; T Zerjal; C Tyler-Smith
Journal:  Nature       Date:  1998-11-05       Impact factor: 49.962

6.  The diploid genome sequence of an Asian individual.

Authors:  Jun Wang; Wei Wang; Ruiqiang Li; Yingrui Li; Geng Tian; Laurie Goodman; Wei Fan; Junqing Zhang; Jun Li; Juanbin Zhang; Yiran Guo; Binxiao Feng; Heng Li; Yao Lu; Xiaodong Fang; Huiqing Liang; Zhenglin Du; Dong Li; Yiqing Zhao; Yujie Hu; Zhenzhen Yang; Hancheng Zheng; Ines Hellmann; Michael Inouye; John Pool; Xin Yi; Jing Zhao; Jinjie Duan; Yan Zhou; Junjie Qin; Lijia Ma; Guoqing Li; Zhentao Yang; Guojie Zhang; Bin Yang; Chang Yu; Fang Liang; Wenjie Li; Shaochuan Li; Dawei Li; Peixiang Ni; Jue Ruan; Qibin Li; Hongmei Zhu; Dongyuan Liu; Zhike Lu; Ning Li; Guangwu Guo; Jianguo Zhang; Jia Ye; Lin Fang; Qin Hao; Quan Chen; Yu Liang; Yeyang Su; A San; Cuo Ping; Shuang Yang; Fang Chen; Li Li; Ke Zhou; Hongkun Zheng; Yuanyuan Ren; Ling Yang; Yang Gao; Guohua Yang; Zhuo Li; Xiaoli Feng; Karsten Kristiansen; Gane Ka-Shu Wong; Rasmus Nielsen; Richard Durbin; Lars Bolund; Xiuqing Zhang; Songgang Li; Huanming Yang; Jian Wang
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

7.  Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms.

Authors:  Mark Vermeulen; Andreas Wollstein; Kristiaan van der Gaag; Oscar Lao; Yali Xue; Qiuju Wang; Lutz Roewer; Hans Knoblauch; Chris Tyler-Smith; Peter de Knijff; Manfred Kayser
Journal:  Forensic Sci Int Genet       Date:  2009-02-23       Impact factor: 4.882

8.  Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree.

Authors:  Yali Xue; Qiuju Wang; Quan Long; Bee Ling Ng; Harold Swerdlow; John Burton; Carl Skuce; Ruth Taylor; Zahra Abdellah; Yali Zhao; Daniel G MacArthur; Michael A Quail; Nigel P Carter; Huanming Yang; Chris Tyler-Smith
Journal:  Curr Biol       Date:  2009-08-27       Impact factor: 10.834

9.  Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:  David R Bentley; Shankar Balasubramanian; Harold P Swerdlow; Geoffrey P Smith; John Milton; Clive G Brown; Kevin P Hall; Dirk J Evers; Colin L Barnes; Helen R Bignell; Jonathan M Boutell; Jason Bryant; Richard J Carter; R Keira Cheetham; Anthony J Cox; Darren J Ellis; Michael R Flatbush; Niall A Gormley; Sean J Humphray; Leslie J Irving; Mirian S Karbelashvili; Scott M Kirk; Heng Li; Xiaohai Liu; Klaus S Maisinger; Lisa J Murray; Bojan Obradovic; Tobias Ost; Michael L Parkinson; Mark R Pratt; Isabelle M J Rasolonjatovo; Mark T Reed; Roberto Rigatti; Chiara Rodighiero; Mark T Ross; Andrea Sabot; Subramanian V Sankar; Aylwyn Scally; Gary P Schroth; Mark E Smith; Vincent P Smith; Anastassia Spiridou; Peta E Torrance; Svilen S Tzonev; Eric H Vermaas; Klaudia Walter; Xiaolin Wu; Lu Zhang; Mohammed D Alam; Carole Anastasi; Ify C Aniebo; David M D Bailey; Iain R Bancarz; Saibal Banerjee; Selena G Barbour; Primo A Baybayan; Vincent A Benoit; Kevin F Benson; Claire Bevis; Phillip J Black; Asha Boodhun; Joe S Brennan; John A Bridgham; Rob C Brown; Andrew A Brown; Dale H Buermann; Abass A Bundu; James C Burrows; Nigel P Carter; Nestor Castillo; Maria Chiara E Catenazzi; Simon Chang; R Neil Cooley; Natasha R Crake; Olubunmi O Dada; Konstantinos D Diakoumakos; Belen Dominguez-Fernandez; David J Earnshaw; Ugonna C Egbujor; David W Elmore; Sergey S Etchin; Mark R Ewan; Milan Fedurco; Louise J Fraser; Karin V Fuentes Fajardo; W Scott Furey; David George; Kimberley J Gietzen; Colin P Goddard; George S Golda; Philip A Granieri; David E Green; David L Gustafson; Nancy F Hansen; Kevin Harnish; Christian D Haudenschild; Narinder I Heyer; Matthew M Hims; Johnny T Ho; Adrian M Horgan; Katya Hoschler; Steve Hurwitz; Denis V Ivanov; Maria Q Johnson; Terena James; T A Huw Jones; Gyoung-Dong Kang; Tzvetana H Kerelska; Alan D Kersey; Irina Khrebtukova; Alex P Kindwall; Zoya Kingsbury; Paula I Kokko-Gonzales; Anil Kumar; Marc A Laurent; Cynthia T Lawley; Sarah E Lee; Xavier Lee; Arnold K Liao; Jennifer A Loch; Mitch Lok; Shujun Luo; Radhika M Mammen; John W Martin; Patrick G McCauley; Paul McNitt; Parul Mehta; Keith W Moon; Joe W Mullens; Taksina Newington; Zemin Ning; Bee Ling Ng; Sonia M Novo; Michael J O'Neill; Mark A Osborne; Andrew Osnowski; Omead Ostadan; Lambros L Paraschos; Lea Pickering; Andrew C Pike; Alger C Pike; D Chris Pinkard; Daniel P Pliskin; Joe Podhasky; Victor J Quijano; Come Raczy; Vicki H Rae; Stephen R Rawlings; Ana Chiva Rodriguez; Phyllida M Roe; John Rogers; Maria C Rogert Bacigalupo; Nikolai Romanov; Anthony Romieu; Rithy K Roth; Natalie J Rourke; Silke T Ruediger; Eli Rusman; Raquel M Sanches-Kuiper; Martin R Schenker; Josefina M Seoane; Richard J Shaw; Mitch K Shiver; Steven W Short; Ning L Sizto; Johannes P Sluis; Melanie A Smith; Jean Ernest Sohna Sohna; Eric J Spence; Kim Stevens; Neil Sutton; Lukasz Szajkowski; Carolyn L Tregidgo; Gerardo Turcatti; Stephanie Vandevondele; Yuli Verhovsky; Selene M Virk; Suzanne Wakelin; Gregory C Walcott; Jingwen Wang; Graham J Worsley; Juying Yan; Ling Yau; Mike Zuerlein; Jane Rogers; James C Mullikin; Matthew E Hurles; Nick J McCooke; John S West; Frank L Oaks; Peter L Lundberg; David Klenerman; Richard Durbin; Anthony J Smith
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

  9 in total
  3 in total

1.  Next-generation sequencing technologies and applications for human genetic history and forensics.

Authors:  Eva C Berglund; Anna Kiialainen; Ann-Christine Syvänen
Journal:  Investig Genet       Date:  2011-11-24

2.  Phylogeographic Refinement and Large Scale Genotyping of Human Y Chromosome Haplogroup E Provide New Insights into the Dispersal of Early Pastoralists in the African Continent.

Authors:  Beniamino Trombetta; Eugenia D'Atanasio; Andrea Massaia; Marco Ippoliti; Alfredo Coppa; Francesca Candilio; Valentina Coia; Gianluca Russo; Jean-Michel Dugoujon; Pedro Moral; Nejat Akar; Daniele Sellitto; Guido Valesini; Andrea Novelletto; Rosaria Scozzari; Fulvio Cruciani
Journal:  Genome Biol Evol       Date:  2015-06-24       Impact factor: 3.416

3.  DIP-STR: highly sensitive markers for the analysis of unbalanced genomic mixtures.

Authors:  Vincent Castella; Joëlle Gervaix; Diana Hall
Journal:  Hum Mutat       Date:  2013-03-05       Impact factor: 4.878

  3 in total

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