Literature DB >> 20128615

Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum.

Eisuke Chikayama1, Yasuyo Sekiyama, Mami Okamoto, Yumiko Nakanishi, Yuuri Tsuboi, Kenji Akiyama, Kazuki Saito, Kazuo Shinozaki, Jun Kikuchi.   

Abstract

NMR-based metabolomics has become a practical and analytical methodology for discovering novel genes, biomarkers, metabolic phenotypes, and dynamic cell behaviors in organisms. Recent developments in NMR-based metabolomics, however, have not concentrated on improvements of comprehensiveness in terms of simultaneous large-scale metabolite detections. To resolve this, we have devised and implemented a statistical index, the SpinAssign p-value, in NMR-based metabolomics for large-scale metabolite annotation and publicized this information. It enables simultaneous annotation of more than 200 candidate metabolites from the single (13)C-HSQC (heteronuclear single quantum coherence) NMR spectrum of a single sample of cell extract.

Mesh:

Year:  2010        PMID: 20128615     DOI: 10.1021/ac9022023

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  57 in total

1.  Bifidobacteria can protect from enteropathogenic infection through production of acetate.

Authors:  Shinji Fukuda; Hidehiro Toh; Koji Hase; Kenshiro Oshima; Yumiko Nakanishi; Kazutoshi Yoshimura; Toru Tobe; Julie M Clarke; David L Topping; Tohru Suzuki; Todd D Taylor; Kikuji Itoh; Jun Kikuchi; Hidetoshi Morita; Masahira Hattori; Hiroshi Ohno
Journal:  Nature       Date:  2011-01-27       Impact factor: 49.962

2.  Concentration of metabolites from low-density planktonic communities for environmental metabolomics using nuclear magnetic resonance spectroscopy.

Authors:  R Craig Everroad; Seiji Yoshida; Yuuri Tsuboi; Yasuhiro Date; Jun Kikuchi; Shigeharu Moriya
Journal:  J Vis Exp       Date:  2012-04-07       Impact factor: 1.355

Review 3.  Integrative systems biology: an attempt to describe a simple weed.

Authors:  Louisa M Liberman; Rosangela Sozzani; Philip N Benfey
Journal:  Curr Opin Plant Biol       Date:  2012-01-23       Impact factor: 7.834

4.  Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.

Authors:  Yukihiro Furusawa; Yuuki Obata; Shinji Fukuda; Takaho A Endo; Gaku Nakato; Daisuke Takahashi; Yumiko Nakanishi; Chikako Uetake; Keiko Kato; Tamotsu Kato; Masumi Takahashi; Noriko N Fukuda; Shinnosuke Murakami; Eiji Miyauchi; Shingo Hino; Koji Atarashi; Satoshi Onawa; Yumiko Fujimura; Trevor Lockett; Julie M Clarke; David L Topping; Masaru Tomita; Shohei Hori; Osamu Ohara; Tatsuya Morita; Haruhiko Koseki; Jun Kikuchi; Kenya Honda; Koji Hase; Hiroshi Ohno
Journal:  Nature       Date:  2013-11-13       Impact factor: 49.962

5.  Comprehensive Metabolite Identification Strategy Using Multiple Two-Dimensional NMR Spectra of a Complex Mixture Implemented in the COLMARm Web Server.

Authors:  Kerem Bingol; Da-Wei Li; Bo Zhang; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2016-12-06       Impact factor: 6.986

Review 6.  Can NMR solve some significant challenges in metabolomics?

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  J Magn Reson       Date:  2015-08-18       Impact factor: 2.229

7.  TOCCATA: a customized carbon total correlation spectroscopy NMR metabolomics database.

Authors:  Kerem Bingol; Fengli Zhang; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2012-10-11       Impact factor: 6.986

Review 8.  Isotope enhanced approaches in metabolomics.

Authors:  G A Nagana Gowda; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

9.  Detoxification of aldehydes by histidine-containing dipeptides: from chemistry to clinical implications.

Authors:  Zhengzhi Xie; Shahid P Baba; Brooke R Sweeney; Oleg A Barski
Journal:  Chem Biol Interact       Date:  2013-01-09       Impact factor: 5.192

Review 10.  Multidimensional approaches to NMR-based metabolomics.

Authors:  Kerem Bingol; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2013-11-22       Impact factor: 6.986

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