Literature DB >> 20123966

Mammalian ALKBH8 possesses tRNA methyltransferase activity required for the biogenesis of multiple wobble uridine modifications implicated in translational decoding.

Lene Songe-Møller1, Erwin van den Born, Vibeke Leihne, Cathrine B Vågbø, Terese Kristoffersen, Hans E Krokan, Finn Kirpekar, Pål Ø Falnes, Arne Klungland.   

Abstract

Uridines in the wobble position of tRNA are almost invariably modified. Modifications can increase the efficiency of codon reading, but they also prevent mistranslation by limiting wobbling. In mammals, several tRNAs have 5-methoxycarbonylmethyluridine (mcm5U) or derivatives thereof in the wobble position. Through analysis of tRNA from Alkbh8-/- mice, we show here that ALKBH8 is a tRNA methyltransferase required for the final step in the biogenesis of mcm5U. We also demonstrate that the interaction of ALKBH8 with a small accessory protein, TRM112, is required to form a functional tRNA methyltransferase. Furthermore, prior ALKBH8-mediated methylation is a prerequisite for the thiolation and 2'-O-ribose methylation that form 5-methoxycarbonylmethyl-2-thiouridine (mcm5s2U) and 5-methoxycarbonylmethyl-2'-O-methyluridine (mcm5Um), respectively. Despite the complete loss of all of these uridine modifications, Alkbh8-/- mice appear normal. However, the selenocysteine-specific tRNA (tRNASec) is aberrantly modified in the Alkbh8-/- mice, and for the selenoprotein Gpx1, we indeed observed reduced recoding of the UGA stop codon to selenocysteine.

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Year:  2010        PMID: 20123966      PMCID: PMC2838068          DOI: 10.1128/MCB.01602-09

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  46 in total

1.  Methylation of the ribosyl moiety at position 34 of selenocysteine tRNA[Ser]Sec is governed by both primary and tertiary structure.

Authors:  L K Kim; T Matsufuji; S Matsufuji; B A Carlson; S S Kim; D L Hatfield; B J Lee
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

2.  Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism.

Authors:  Tomonori Kaneko; Takeo Suzuki; Stephen T Kapushoc; Mary Anne Rubio; Jafar Ghazvini; Kimitsuna Watanabe; Larry Simpson; Tsutomu Suzuki
Journal:  EMBO J       Date:  2003-02-03       Impact factor: 11.598

3.  AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli.

Authors:  Pål Ø Falnes; Rune F Johansen; Erling Seeberg
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

4.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

5.  Selective inhibition of selenocysteine tRNA maturation and selenoprotein synthesis in transgenic mice expressing isopentenyladenosine-deficient selenocysteine tRNA.

Authors:  M E Moustafa; B A Carlson; M A El-Saadani; G V Kryukov; Q A Sun; J W Harney; K E Hill; G F Combs; L Feigenbaum; D B Mansur; R F Burk; M J Berry; A M Diamond; B J Lee; V N Gladyshev; D L Hatfield
Journal:  Mol Cell Biol       Date:  2001-06       Impact factor: 4.272

6.  Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage.

Authors:  Sarah C Trewick; Timothy F Henshaw; Robert P Hausinger; Tomas Lindahl; Barbara Sedgwick
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

7.  Defects in tRNA modification associated with neurological and developmental dysfunctions in Caenorhabditis elegans elongator mutants.

Authors:  Changchun Chen; Simon Tuck; Anders S Byström
Journal:  PLoS Genet       Date:  2009-07-10       Impact factor: 5.917

8.  Characterization of mammalian selenoproteomes.

Authors:  Gregory V Kryukov; Sergi Castellano; Sergey V Novoselov; Alexey V Lobanov; Omid Zehtab; Roderic Guigó; Vadim N Gladyshev
Journal:  Science       Date:  2003-05-30       Impact factor: 47.728

9.  Novel methyltransferase for modified uridine residues at the wobble position of tRNA.

Authors:  Hamid R Kalhor; Steven Clarke
Journal:  Mol Cell Biol       Date:  2003-12       Impact factor: 4.272

10.  Development of a tRNA-dependent in vitro translation system.

Authors:  R J Jackson; S Napthine; I Brierley
Journal:  RNA       Date:  2001-05       Impact factor: 4.942

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  99 in total

1.  Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification.

Authors:  Chiara Pastore; Irini Topalidou; Farhad Forouhar; Amy C Yan; Matthew Levy; John F Hunt
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

2.  ALKBH8-mediated formation of a novel diastereomeric pair of wobble nucleosides in mammalian tRNA.

Authors:  Erwin van den Born; Cathrine B Vågbø; Lene Songe-Møller; Vibeke Leihne; Guro F Lien; Grazyna Leszczynska; Andrzej Malkiewicz; Hans E Krokan; Finn Kirpekar; Arne Klungland; Pål Ø Falnes
Journal:  Nat Commun       Date:  2011-02-01       Impact factor: 14.919

Review 3.  Codon-biased translation can be regulated by wobble-base tRNA modification systems during cellular stress responses.

Authors:  Lauren Endres; Peter C Dedon; Thomas J Begley
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes.

Authors:  Erna Davydova; Tadahiro Shimazu; Maren Kirstin Schuhmacher; Magnus E Jakobsson; Hanneke L D M Willemen; Tongri Liu; Anders Moen; Angela Y Y Ho; Jędrzej Małecki; Lisa Schroer; Rita Pinto; Takehiro Suzuki; Ida A Grønsberg; Yoshihiro Sohtome; Mai Akakabe; Sara Weirich; Masaki Kikuchi; Jesper V Olsen; Naoshi Dohmae; Takashi Umehara; Mikiko Sodeoka; Valentina Siino; Michael A McDonough; Niels Eijkelkamp; Christopher J Schofield; Albert Jeltsch; Yoichi Shinkai; Pål Ø Falnes
Journal:  Nat Commun       Date:  2021-02-09       Impact factor: 14.919

5.  Alkbh2 protects against lethality and mutation in primary mouse embryonic fibroblasts.

Authors:  Stephanie L Nay; Dong-Hyun Lee; Steven E Bates; Timothy R O'Connor
Journal:  DNA Repair (Amst)       Date:  2012-03-17

Review 6.  DNA repair by reversal of DNA damage.

Authors:  Chengqi Yi; Chuan He
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-01-01       Impact factor: 10.005

7.  Gene- and genome-based analysis of significant codon patterns in yeast, rat and mice genomes with the CUT Codon UTilization tool.

Authors:  Frank Doyle; Andrea Leonardi; Lauren Endres; Scott A Tenenbaum; Peter C Dedon; Thomas J Begley
Journal:  Methods       Date:  2016-05-28       Impact factor: 3.608

8.  Mechanistic studies on the application of DNA aptamers as inhibitors of 2-oxoglutarate-dependent oxygenases.

Authors:  Svetlana M Krylova; Vasilij Koshkin; Eleanor Bagg; Christopher J Schofield; Sergey N Krylov
Journal:  J Med Chem       Date:  2012-04-03       Impact factor: 7.446

Review 9.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

10.  Mice lacking Alkbh1 display sex-ratio distortion and unilateral eye defects.

Authors:  Line M Nordstrand; Jessica Svärd; Elisabeth Larsen; Anja Nilsen; Rune Ougland; Kari Furu; Guro F Lien; Torbjørn Rognes; Satoshi H Namekawa; Jeannie T Lee; Arne Klungland
Journal:  PLoS One       Date:  2010-11-03       Impact factor: 3.240

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