Literature DB >> 20118375

Hitherto unknown [Fe-Fe]-hydrogenase gene diversity in anaerobes and anoxic enrichments from a moderately acidic fen.

Oliver Schmidt1, Harold L Drake, Marcus A Horn.   

Abstract

Newly designed primers for [Fe-Fe]-hydrogenases indicated that (i) fermenters, acetogens, and undefined species in a fen harbor hitherto unknown hydrogenases and (ii) Clostridium- and Thermosinus-related primary fermenters, as well as secondary fermenters related to sulfate or iron reducers might be responsible for hydrogen production in the fen. Comparative analysis of [Fe-Fe]-hydrogenase and 16S rRNA gene-based phylogenies indicated the presence of homologous multiple hydrogenases per organism and inconsistencies between 16S rRNA gene- and [Fe-Fe]-hydrogenase-based phylogenies, necessitating appropriate qualification of [Fe-Fe]-hydrogenase gene data for diversity analyses.

Entities:  

Mesh：

Substances：

Year:  2010        PMID： 20118375      PMCID： PMC2838027          DOI： 10.1128/AEM.02895-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  33 in total

1.  GenBank.

Authors:  D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  Classification and phylogeny of hydrogenases.

Authors:  P M Vignais; B Billoud; J Meyer
Journal:  FEMS Microbiol Rev       Date:  2001-08       Impact factor: 16.408

3.  Energetics of Growth of a Defined Mixed Culture of Desulfovibrio vulgaris and Methanosarcina barkeri: Interspecies Hydrogen Transfer in Batch and Continuous Cultures.

Authors:  A S Traore; M L Fardeau; C E Hatchikian; J Le Gall; J P Belaich
Journal:  Appl Environ Microbiol       Date:  1983-11       Impact factor: 4.792

Review 4.  The rumen microbial ecosystem--some recent developments.

Authors:  H J Flint
Journal:  Trends Microbiol       Date:  1997-12       Impact factor: 17.079

5.  Hydrogen metabolism in Desulfovibrio desulfuricans strain New Jersey (NCIMB 8313)--comparative study with D. vulgaris and D. gigas species.

Authors:  M Carepo; J F Baptista; A Pamplona; G Fauque; J J G Moura; M A M Reis
Journal:  Anaerobe       Date:  2002-12       Impact factor: 3.331

6.  Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots.

Authors:  K Küsel; A Karnholz; T Trinkwalter; R Devereux; G Acker; H L Drake
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

7.  Genetic diversity of hydrogen-producing bacteria in an acidophilic ethanol-H2-coproducing system, analyzed using the [Fe]-hydrogenase gene.

Authors:  Defeng Xing; Nanqi Ren; Bruce E Rittmann
Journal:  Appl Environ Microbiol       Date:  2007-12-21       Impact factor: 4.792

8.  Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium.

Authors:  Qi Ye; Yul Roh; Susan L Carroll; Benjamin Blair; Jizhong Zhou; Chuanlun L Zhang; Matthew W Fields
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

9.  Trophic links between fermenters and methanogens in a moderately acidic fen soil.

Authors:  Pia K Wüst; Marcus A Horn; Harold L Drake
Journal:  Environ Microbiol       Date:  2009-02-13       Impact factor: 5.491

Review 10.  Hydrogenases and H(+)-reduction in primary energy conservation.

Authors:  Paulette M Vignais
Journal:  Results Probl Cell Differ       Date:  2008
View more
  19 in total

Review 1.  Metagenomic analyses: past and future trends.

Authors:  Carola Simon; Rolf Daniel
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

2.  Investigation of the FeFe-hydrogenase gene diversity combined with phylogenetic microbial community analysis of an anaerobic domestic sewage sludge.

Authors:  Geizecler Tomazetto; Valéria M Oliveira
Journal:  World J Microbiol Biotechnol       Date:  2013-04-30       Impact factor: 3.312

3.  Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.

Authors:  Kelly C Wrighton; Cindy J Castelle; Michael J Wilkins; Laura A Hug; Itai Sharon; Brian C Thomas; Kim M Handley; Sean W Mullin; Carrie D Nicora; Andrea Singh; Mary S Lipton; Philip E Long; Kenneth H Williams; Jillian F Banfield
Journal:  ISME J       Date:  2014-03-13       Impact factor: 10.302

4.  Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra.

Authors:  Katharina Palmer; Christina Biasi; Marcus A Horn
Journal:  ISME J       Date:  2011-12-01       Impact factor: 10.302

5.  Global gene expression patterns in Clostridium thermocellum as determined by microarray analysis of chemostat cultures on cellulose or cellobiose.

Authors:  Allison Riederer; Taichi E Takasuka; Shin-ichi Makino; David M Stevenson; Yury V Bukhman; Nathaniel L Elsen; Brian G Fox
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

6.  Novel [NiFe]- and [FeFe]-hydrogenase gene transcripts indicative of active facultative aerobes and obligate anaerobes in earthworm gut contents.

Authors:  Oliver Schmidt; Pia K Wüst; Susanne Hellmuth; Katharina Borst; Marcus A Horn; Harold L Drake
Journal:  Appl Environ Microbiol       Date:  2011-07-22       Impact factor: 4.792

7.  Hydrogen-producing microflora and Fe-Fe hydrogenase diversities in seaweed bed associated with marine hot springs of Kalianda, Indonesia.

Authors:  Shou-Ying Xu; Pei-Qing He; Seswita-Zilda Dewi; Xue-Lei Zhang; Chasanah Ekowati; Tong-Jun Liu; Xiao-Hang Huang
Journal:  Curr Microbiol       Date:  2013-01-17       Impact factor: 2.188

Review 8.  Contributions of the microbial hydrogen economy to colonic homeostasis.

Authors:  Franck Carbonero; Ann C Benefiel; H Rex Gaskins
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2012-05-15       Impact factor: 46.802

9.  The metagenome-derived enzymes LipS and LipT increase the diversity of known lipases.

Authors:  Jennifer Chow; Filip Kovacic; Yuliya Dall Antonia; Ulrich Krauss; Francesco Fersini; Christel Schmeisser; Benjamin Lauinger; Patrick Bongen; Joerg Pietruszka; Marlen Schmidt; Ina Menyes; Uwe T Bornscheuer; Marrit Eckstein; Oliver Thum; Andreas Liese; Jochen Mueller-Dieckmann; Karl-Erich Jaeger; Wolfgang R Streit
Journal:  PLoS One       Date:  2012-10-24       Impact factor: 3.240

10.  Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities.

Authors:  William J Brazelton; Bridget Nelson; Matthew O Schrenk
Journal:  Front Microbiol       Date:  2012-01-06       Impact factor: 5.640
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.