Literature DB >> 20118359

Identification of pathogenic Vibrio species by multilocus PCR-electrospray ionization mass spectrometry and its application to aquatic environments of the former soviet republic of Georgia.

Chris A Whitehouse1, Carson Baldwin, Rangarajan Sampath, Lawrence B Blyn, Rachael Melton, Feng Li, Thomas A Hall, Vanessa Harpin, Heather Matthews, Marina Tediashvili, Ekaterina Jaiani, Tamar Kokashvili, Nino Janelidze, Christopher Grim, Rita R Colwell, Anwar Huq.   

Abstract

The Ibis T5000 is a novel diagnostic platform that couples PCR and mass spectrometry. In this study, we developed an assay that can identify all known pathogenic Vibrio species and field-tested it using natural water samples from both freshwater lakes and the Georgian coastal zone of the Black Sea. Of the 278 total water samples screened, 9 different Vibrio species were detected, 114 (41%) samples were positive for V. cholerae, and 5 (0.8%) samples were positive for the cholera toxin A gene (ctxA). All ctxA-positive samples were from two freshwater lakes, and no ctxA-positive samples from any of the Black Sea sites were detected.

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Year:  2010        PMID: 20118359      PMCID: PMC2838023          DOI: 10.1128/AEM.01919-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  8 in total

1.  Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus.

Authors:  J Chun; A Huq; R R Colwell
Journal:  Appl Environ Microbiol       Date:  1999-05       Impact factor: 4.792

Review 2.  Analysis of nucleic acids by FTICR MS.

Authors:  Steven A Hofstadler; Kristin A Sannes-Lowery; James C Hannis
Journal:  Mass Spectrom Rev       Date:  2005 Mar-Apr       Impact factor: 10.946

3.  Usefulness of multilocus polymerase chain reaction followed by electrospray ionization mass spectrometry to identify a diverse panel of bacterial isolates.

Authors:  Carson D Baldwin; Gerald B Howe; Ranga Sampath; Larry B Blyn; Heather Matthews; Vanessa Harpin; Thomas A Hall; Jared J Drader; Steve A Hofstadler; Mark W Eshoo; Karl Rudnick; Karen Studarus; David Moore; Sharon Abbott; J Michael Janda; Chris A Whitehouse
Journal:  Diagn Microbiol Infect Dis       Date:  2009-02-18       Impact factor: 2.803

4.  Genotypes associated with virulence in environmental isolates of Vibrio cholerae.

Authors:  I N Rivera; J Chun; A Huq; R B Sack; R R Colwell
Journal:  Appl Environ Microbiol       Date:  2001-06       Impact factor: 4.792

5.  Detection of Vibrio cholerae O1 in the aquatic environment by fluorescent-monoclonal antibody and culture methods.

Authors:  A Huq; R R Colwell; R Rahman; A Ali; M A Chowdhury; S Parveen; D A Sack; E Russek-Cohen
Journal:  Appl Environ Microbiol       Date:  1990-08       Impact factor: 4.792

6.  Detection of toxigenic Vibrio cholerae O1 in freshwater lakes of the former Soviet Republic of Georgia.

Authors:  Christopher J Grim; Ekaterina Jaiani; Chris A Whitehouse; Nino Janelidze; Tamuna Kokashvili; Marina Tediashvili; Rita R Colwell; Anwar Huq
Journal:  Environ Microbiol Rep       Date:  2009-09-03       Impact factor: 3.541

Review 7.  Ibis T5000: a universal biosensor approach for microbiology.

Authors:  David J Ecker; Rangarajan Sampath; Christian Massire; Lawrence B Blyn; Thomas A Hall; Mark W Eshoo; Steven A Hofstadler
Journal:  Nat Rev Microbiol       Date:  2008-06-03       Impact factor: 60.633

Review 8.  Rapid identification of emerging infectious agents using PCR and electrospray ionization mass spectrometry.

Authors:  Rangarajan Sampath; Thomas A Hall; Christian Massire; Feng Li; Lawrence B Blyn; Mark W Eshoo; Steven A Hofstadler; David J Ecker
Journal:  Ann N Y Acad Sci       Date:  2007-04       Impact factor: 5.691

  8 in total
  7 in total

1.  PCR-electrospray ionization mass spectrometry for direct detection of pathogens and antimicrobial resistance from heart valves in patients with infective endocarditis.

Authors:  Cassandra L Brinkman; Paschalis Vergidis; James R Uhl; Bobbi S Pritt; Franklin R Cockerill; James M Steckelberg; Larry M Baddour; Joseph J Maleszewski; William D Edwards; Rangarajan Sampath; Robin Patel
Journal:  J Clin Microbiol       Date:  2013-04-17       Impact factor: 5.948

2.  Comprehensive biothreat cluster identification by PCR/electrospray-ionization mass spectrometry.

Authors:  Rangarajan Sampath; Niveen Mulholland; Lawrence B Blyn; Christian Massire; Chris A Whitehouse; Nicole Waybright; Courtney Harter; Joseph Bogan; Mary Sue Miranda; David Smith; Carson Baldwin; Mark Wolcott; David Norwood; Rachael Kreft; Mark Frinder; Robert Lovari; Irene Yasuda; Heather Matthews; Donna Toleno; Roberta Housley; David Duncan; Feng Li; Robin Warren; Mark W Eshoo; Thomas A Hall; Steven A Hofstadler; David J Ecker
Journal:  PLoS One       Date:  2012-06-29       Impact factor: 3.240

3.  Microbial community responses to organophosphate substrate additions in contaminated subsurface sediments.

Authors:  Robert J Martinez; Cindy H Wu; Melanie J Beazley; Gary L Andersen; Mark E Conrad; Terry C Hazen; Martial Taillefert; Patricia A Sobecky
Journal:  PLoS One       Date:  2014-06-20       Impact factor: 3.240

4.  1st German Phage Symposium-Conference Report.

Authors:  Irene Huber; Katerina Potapova; Andreas Kuhn; Herbert Schmidt; Jörg Hinrichs; Christine Rohde; Wolfgang Beyer
Journal:  Viruses       Date:  2018-03-29       Impact factor: 5.048

5.  Development of real-time PCR array for simultaneous detection of eight human blood-borne viral pathogens.

Authors:  Natalia Pripuzova; Richard Wang; Shien Tsai; Bingjie Li; Guo-Chiuan Hung; Roger G Ptak; Shyh-Ching Lo
Journal:  PLoS One       Date:  2012-08-17       Impact factor: 3.240

6.  Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia.

Authors:  Tamar Kokashvili; Chris A Whitehouse; Ana Tskhvediani; Christopher J Grim; Tinatin Elbakidze; Nino Mitaishvili; Nino Janelidze; Ekaterine Jaiani; Bradd J Haley; Nino Lashkhi; Anwar Huq; Rita R Colwell; Marina Tediashvili
Journal:  Front Public Health       Date:  2015-10-13

Review 7.  PCR-electrospray ionization mass spectrometry: the potential to change infectious disease diagnostics in clinical and public health laboratories.

Authors:  Donna M Wolk; Erin J Kaleta; Vicki H Wysocki
Journal:  J Mol Diagn       Date:  2012-05-11       Impact factor: 5.568

  7 in total

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