Literature DB >> 20118293

Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs.

Timofey A Pankratov1, Svetlana N Dedysh1.   

Abstract

Five strains of strictly aerobic, heterotrophic bacteria that form pink-red colonies and are capable of hydrolysing pectin, xylan, laminarin, lichenan and starch were isolated from acidic Sphagnum peat bogs and were designated OB1010(T), LCBR1, TPB6011(T), TPB6028(T) and TPO1014(T). Cells of these isolates were Gram-negative, non-motile rods that produced an amorphous extracellular polysaccharide-like substance. Old cultures contained spherical bodies of varying sizes, which represent starvation forms. Cells of all five strains were acidophilic and psychrotolerant, capable of growth at pH 3.0-7.5 (optimum pH 3.8-4.5) and at 2-33°C (optimum 15-22°C). The major fatty acids were iso-C(15 : 0), C(16 : 0) and summed feature 3 (C(16 : 1)ω7c and/or iso-C(15 : 0) 2-OH). The major menaquinone detected was MK-8. The pigments were carotenoids. The genomic DNA G+C contents were 57.3-59.3 mol%. The five isolates were found to be members of subdivision 1 of the phylum Acidobacteria and displayed 95.3-98.9 % 16S rRNA gene sequence similarity to each other. The closest described relatives to strains OB1010(T), LCBR1, TPB6011(T), TPB6028(T), and TPO1014(T) were members of the genera Terriglobus (94.6-95.8 % 16S rRNA gene sequence similarity) and Edaphobacter (94.2-95.4 %). Based on differences in cell morphology, phenotypic characteristics and hydrolytic capabilities, we propose a novel genus, Granulicella gen. nov., containing four novel species, Granulicella paludicola sp. nov. with type strain OB1010(T) (=DSM 22464(T) =LMG 25275(T)) and strain LCBR1, Granulicella pectinivorans sp. nov. with type strain TPB6011(T) (=VKM B-2509(T) =DSM 21001(T)), Granulicella rosea sp. nov. with type strain TPO1014(T) (=DSM 18704(T) =ATCC BAA-1396(T)) and Granulicella aggregans sp. nov. with type strain TPB6028(T) (=LMG 25274(T) =VKM B-2571(T)).

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Year:  2010        PMID: 20118293     DOI: 10.1099/ijs.0.021824-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  39 in total

1.  13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Johan W H Weijers; Bärbel U Foesel; Jörg Overmann; Svetlana N Dedysh
Journal:  Appl Environ Microbiol       Date:  2011-04-22       Impact factor: 4.792

2.  Acidobacteria in freshwater ponds at Doñana National Park, Spain.

Authors:  Johannes Zimmermann; M Carmen Portillo; Laura Serrano; Wolfgang Ludwig; Juan M Gonzalez
Journal:  Microb Ecol       Date:  2011-12-15       Impact factor: 4.552

3.  Identification of cellulose-responsive bacterial and fungal communities in geographically and edaphically different soils by using stable isotope probing.

Authors:  Stephanie A Eichorst; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

4.  Recovery of as-yet-uncultured soil acidobacteria on dilute solid media.

Authors:  Isabelle F George; Manuela Hartmann; Mark R Liles; Spiros N Agathos
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

5.  Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria.

Authors:  Stephanie A Eichorst; Cheryl R Kuske; Thomas M Schmidt
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

6.  Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils.

Authors:  Hilary T C Leung; Kendra R Maas; Roland C Wilhelm; William W Mohn
Journal:  ISME J       Date:  2015-08-14       Impact factor: 10.302

7.  Thermotomaculum hydrothermale gen. nov., sp. nov., a novel heterotrophic thermophile within the phylum Acidobacteria from a deep-sea hydrothermal vent chimney in the Southern Okinawa Trough.

Authors:  Hiroshi Izumi; Takuro Nunoura; Masayuki Miyazaki; Sayaka Mino; Tomohiro Toki; Ken Takai; Yoshihiko Sako; Tomoo Sawabe; Satoshi Nakagawa
Journal:  Extremophiles       Date:  2012-01-03       Impact factor: 2.395

8.  Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Bärbel U Foesel; Pia K Wüst; Jörg Overmann; Marcus Tank; Donald A Bryant; Peter F Dunfield; Karen Houghton; Matthew B Stott
Journal:  Appl Environ Microbiol       Date:  2014-06-13       Impact factor: 4.792

9.  Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya.

Authors:  Samuel Mwangangi Muturi; Lucy Wangui Muthui; Paul Mwangi Njogu; Justus Mong'are Onguso; Francis Nyamu Wachira; Stephen Obol Opiyo; Roger Pelle
Journal:  PLoS One       Date:  2021-01-04       Impact factor: 3.240

10.  Soil Acidobacteria Strain AB23 Resistance to Oxidative Stress Through Production of Carotenoids.

Authors:  Otávio Henrique Bezerra Pinto; Flávio Silva Costa; Gisele Regina Rodrigues; Rosiane Andrade da Costa; Gabriel da Rocha Fernandes; Osmindo Rodrigues Pires Júnior; Cristine Chaves Barreto
Journal:  Microb Ecol       Date:  2020-07-02       Impact factor: 4.552

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