Literature DB >> 20118290

Ekhidna lutea gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from the South East Pacific Ocean.

Karine Alain1, Brian J Tindall2, Philippe Catala1, Laurent Intertaglia1, Philippe Lebaron1.   

Abstract

A novel aerobic, heterotrophic bacterium, designated BiosLi39(T), was isolated from the South East Pacific Ocean. Cells were Gram-negative gliding rods forming yellow colonies on marine agar. The isolate was oxidase-, catalase- and alkaline phosphatase-positive and β-galactosidase-negative. Strain BiosLi39(T) grew at 20-37°C (optimum 30°C), at pH7.0-9.0 (optimum pH8.0) and with 20-60 g NaCl l(-1) (optimum 30-50 g NaCl l(-1)). The fatty acids (>1 %) comprised iso-C(14 : 0), iso-C(15 : 1) G, iso-C(15 : 0), anteiso-C(15 : 0), C(15 : 1) G, C(15 : 0), iso-C(15 : 0) 2-OH, iso-C(16 : 1) G, iso-C(16 : 0), iso-C(16 : 0) 3-OH, iso-C(16 : 0) 2-OH, iso-C(17 : 0) 3-OH, C(17 : 0) 2-OH and three unidentified components with equivalent chain lengths of 17.87, 18.10 and 18.71. A significant proportion of the hydroxylated fatty acids are amide-linked. The lipid pattern indicated the presence of phosphatidylethanolamine, two unidentified aminolipids and three unidentified polar lipids. The strain contained menaquinone 7 as the sole respiratory lipoquinone and did not produce flexirubin-type pigments. The G+C content of the genomic DNA was 37.2 mol%. Comparative 16S rRNA gene sequence analysis indicated that strain BiosLi39(T) was distantly related to all of the representatives of the phylum Bacteroidetes. Its closest relative was Marinoscillum furvescens IFO 15994(T), with which it shared 92.5 % 16S rRNA gene sequence similarity. On the basis of genotypic, phenotypic and chemotaxonomic characteristics, we propose a novel genus and species, Ekhidna gen. nov., sp. nov., with type strain BiosLi39(T) (=DSM 19307(T) =CIP 109600(T) =OOB 398(T)).

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Year:  2010        PMID: 20118290     DOI: 10.1099/ijs.0.018804-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  6 in total

1.  Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.

Authors:  Marina García-López; Jan P Meier-Kolthoff; Brian J Tindall; Sabine Gronow; Tanja Woyke; Nikos C Kyrpides; Richard L Hahnke; Markus Göker
Journal:  Front Microbiol       Date:  2019-09-23       Impact factor: 5.640

2.  A new antibacterial amino phenyl pyrrolidone derivative from a novel marine gliding bacterium Rapidithrix thailandica.

Authors:  Yutthapong Sangnoi; Anuchit Plubrukarn; Vullapa Arunpairojana; Akkharawit Kanjana-Opas
Journal:  World J Microbiol Biotechnol       Date:  2013-10-27       Impact factor: 3.312

3.  A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes.

Authors:  Sheila Podell; Jessica M Blanton; Aaron Oliver; Michelle A Schorn; Vinayak Agarwal; Jason S Biggs; Bradley S Moore; Eric E Allen
Journal:  Microbiome       Date:  2020-06-23       Impact factor: 14.650

4.  Microbial communities in the nepheloid layers and hypoxic zones of the Canary Current upwelling system.

Authors:  Stefan Thiele; Andreas Basse; Jamie W Becker; Andre Lipski; Morten H Iversen; Gesine Mollenhauer
Journal:  Microbiologyopen       Date:  2018-10-11       Impact factor: 3.139

5.  Bacterial avidins are a widely distributed protein family in Actinobacteria, Proteobacteria and Bacteroidetes.

Authors:  Olli H Laitinen; Tanja P Kuusela; Sampo Kukkurainen; Anssi Nurminen; Aki Sinkkonen; Vesa P Hytönen
Journal:  BMC Ecol Evol       Date:  2021-04-09

6.  Diversity and Metabolic Potentials of Subsurface Crustal Microorganisms from the Western Flank of the Mid-Atlantic Ridge.

Authors:  Xinxu Zhang; Xiaoyuan Feng; Fengping Wang
Journal:  Front Microbiol       Date:  2016-03-18       Impact factor: 5.640

  6 in total

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