Literature DB >> 20100286

Evolutionary aspects of urea utilization by fungi.

Dhammika H M L P Navarathna1, Steven D Harris, David D Roberts, Kenneth W Nickerson.   

Abstract

The higher fungi exhibit a dichotomy with regard to urea utilization. The hemiascomycetes use urea amidolyase (DUR1,2), whereas all other higher fungi use the nickel-containing urease. Urea amidolyase is an energy-dependent biotin-containing enzyme. It likely arose before the Euascomycete/Hemiascomycete divergence c. 350 million years ago by insertion of an unknown gene into one copy of a duplicated methylcrotonyl CoA carboxylase (MccA). The dichotomy between urease and urea amidolyase coincides precisely with that for the Ni/Co transporter (Nic1p), which is present in the higher fungi that use urease and is absent in those that do not. We suggest that the selective advantage for urea amidolyase is that it allowed the hemiascomycetes to jettison all Ni(2+)- and Co(2+)-dependent metabolisms and thus to have two fewer transition metals whose concentrations need to be regulated. Also, the absence of MccA in the hemiascomycetes coincides with and may explain their production of fusel alcohols.

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Year:  2010        PMID: 20100286      PMCID: PMC2822880          DOI: 10.1111/j.1567-1364.2010.00602.x

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  22 in total

1.  Urease as a virulence factor in experimental cryptococcosis.

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Journal:  Infect Immun       Date:  2000-02       Impact factor: 3.441

2.  Effect of carbon dioxide on the growth and form of Candida albicans.

Authors:  W Sims
Journal:  J Med Microbiol       Date:  1986-11       Impact factor: 2.472

3.  Urea amidolyase. The involvement of biotin in urea cleavage.

Authors:  R J Roon; J Hampshire; B Levenberg
Journal:  J Biol Chem       Date:  1972-12-10       Impact factor: 5.157

4.  Urea amidolyase. I. Properties of the enzyme from Candida utilis.

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Journal:  J Biol Chem       Date:  1972-07-10       Impact factor: 5.157

5.  Growth requriements of Candida species.

Authors:  S G Dastidar; N M Purandare; S C Desai
Journal:  Indian J Exp Biol       Date:  1967-10       Impact factor: 0.818

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Authors:  D Samols; C G Thornton; V L Murtif; G K Kumar; F C Haase; H G Wood
Journal:  J Biol Chem       Date:  1988-05-15       Impact factor: 5.157

7.  Transcriptional response of Candida albicans upon internalization by macrophages.

Authors:  Michael C Lorenz; Jennifer A Bender; Gerald R Fink
Journal:  Eukaryot Cell       Date:  2004-10

8.  Nickel requirement of a urease-deficient mutant in Aspergillus nidulans.

Authors:  E M Mackay; J A Pateman
Journal:  J Gen Microbiol       Date:  1980-01

9.  Structural analysis of the dur loci in S. cerevisiae: two domains of a single multifunctional gene.

Authors:  T G Cooper; C Lam; V Turoscy
Journal:  Genetics       Date:  1980-03       Impact factor: 4.562

10.  Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization.

Authors:  Yan Zhang; Dmitry A Rodionov; Mikhail S Gelfand; Vadim N Gladyshev
Journal:  BMC Genomics       Date:  2009-02-10       Impact factor: 3.969

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  21 in total

1.  Crystal structure of urea carboxylase provides insights into the carboxyltransfer reaction.

Authors:  Chen Fan; Chi-Yuan Chou; Liang Tong; Song Xiang
Journal:  J Biol Chem       Date:  2012-01-25       Impact factor: 5.157

2.  Structure and function of allophanate hydrolase.

Authors:  Chen Fan; Zi Li; Huiyong Yin; Song Xiang
Journal:  J Biol Chem       Date:  2013-06-10       Impact factor: 5.157

3.  3-to-1: unraveling structural transitions in ureases.

Authors:  Rodrigo Ligabue-Braun; Fábio Carrer Andreis; Hugo Verli; Célia Regina Carlini
Journal:  Naturwissenschaften       Date:  2013-04-26

4.  The urea carboxylase and allophanate hydrolase activities of urea amidolyase are functionally independent.

Authors:  Yi Lin; Cody J Boese; Martin St Maurice
Journal:  Protein Sci       Date:  2016-08-05       Impact factor: 6.725

5.  Single-particle analysis of urea amidolyase reveals its molecular mechanism.

Authors:  Ying Liu; Bin Yuan; Liang Peng; Jing Zhao; Bin Cheng; Yuhua Huang; Xinxing Zheng; Yuerong Zhou; Song Xiang; Li Zhu; Yi Wu
Journal:  Protein Sci       Date:  2020-03-10       Impact factor: 6.725

6.  Histidine degradation via an aminotransferase increases the nutritional flexibility of Candida glabrata.

Authors:  Sascha Brunke; Katja Seider; Martin Ernst Richter; Sibylle Bremer-Streck; Shruthi Ramachandra; Michael Kiehntopf; Matthias Brock; Bernhard Hube
Journal:  Eukaryot Cell       Date:  2014-04-11

Review 7.  Structure and function of biotin-dependent carboxylases.

Authors:  Liang Tong
Journal:  Cell Mol Life Sci       Date:  2012-08-07       Impact factor: 9.261

8.  Solving the Conundrum: Widespread Proteins Annotated for Urea Metabolism in Bacteria Are Carboxyguanidine Deiminases Mediating Nitrogen Assimilation from Guanidine.

Authors:  Nicholas O Schneider; Lambros J Tassoulas; Danyun Zeng; Amanda J Laseke; Nicholas J Reiter; Lawrence P Wackett; Martin St Maurice
Journal:  Biochemistry       Date:  2020-08-25       Impact factor: 3.162

9.  Urea amidolyase (DUR1,2) contributes to virulence and kidney pathogenesis of Candida albicans.

Authors:  Dhammika H M L P Navarathna; Michail S Lionakis; Martin J Lizak; Jeeva Munasinghe; Kenneth W Nickerson; David D Roberts
Journal:  PLoS One       Date:  2012-10-29       Impact factor: 3.240

10.  Is the nickel-dependent urease complex of Cryptococcus the pathogen's Achilles' heel?

Authors:  Carl A Morrow; James A Fraser
Journal:  MBio       Date:  2013-06-25       Impact factor: 7.867

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