Literature DB >> 20088888

Molecular population genetics and phenotypic sensitivity to ethanol for a globally diverse sample of the nematode Caenorhabditis briggsae.

Asher D Cutter1, Weiang Yan, Nadejda Tsvetkov, Supreet Sunil, Marie-Anne Félix.   

Abstract

New genomic resources and genetic tools of the past few years have advanced the nematode genus Caenorhabditis as a model for comparative biology. However, understanding of natural genetic variation at molecular and phenotypic levels remains rudimentary for most species in this genus, and for C. briggsae in particular. Here we characterize phenotypic variation in C. briggsae's sensitivity to the potentially important and variable environmental toxin, ethanol, for globally diverse strains. We also quantify nucleotide variation in a new sample of 32 strains from four continents, including small islands, and for the closest-known relative of this species (C. sp. 9). We demonstrate that C. briggsae exhibits little heritable variation for the effects of ethanol on the norm of reaction for survival and reproduction. Moreover, C. briggsae does not differ significantly from C. elegans in our assays of its response to this substance that both species likely encounter regularly in habitats of rotting fruit and vegetation. However, we uncover drastically more molecular genetic variation than was known previously for this species, despite most strains, including all island strains, conforming to the broad biogeographic patterns described previously. Using patterns of sequence divergence between populations and between species, we estimate that the self-fertilizing mode of reproduction by hermaphrodites in C. briggsae likely evolved sometime between 0.9 and 10 million generations ago. These insights into C. briggsae's natural history and natural genetic variation greatly expand the potential of this organism as an emerging model for studies in molecular and quantitative genetics, the evolution of development, and ecological genetics.

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Year:  2010        PMID: 20088888     DOI: 10.1111/j.1365-294X.2009.04491.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  24 in total

1.  Rapid decline in fitness of mutation accumulation lines of gonochoristic (outcrossing) Caenorhabditis nematodes.

Authors:  Charles F Baer; Joanna Joyner-Matos; Dejerianne Ostrow; Veronica Grigaltchik; Matthew P Salomon; Ambuj Upadhyay
Journal:  Evolution       Date:  2010-11       Impact factor: 3.694

2.  Global population genetic structure of Caenorhabditis remanei reveals incipient speciation.

Authors:  Alivia Dey; Yong Jeon; Guo-Xiu Wang; Asher D Cutter
Journal:  Genetics       Date:  2012-05-29       Impact factor: 4.562

3.  Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae.

Authors:  Asher D Cutter; Jae Young Choi
Journal:  Genome Res       Date:  2010-05-27       Impact factor: 9.043

4.  Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins.

Authors:  Da Yin; Erich M Schwarz; Cristel G Thomas; Rebecca L Felde; Ian F Korf; Asher D Cutter; Caitlin M Schartner; Edward J Ralston; Barbara J Meyer; Eric S Haag
Journal:  Science       Date:  2018-01-05       Impact factor: 47.728

5.  The evolutionary dynamics of operon distributions in eukaryote genomes.

Authors:  Asher D Cutter; Aneil F Agrawal
Journal:  Genetics       Date:  2010-04-09       Impact factor: 4.562

6.  Distinct molecular targets including SLO-1 and gap junctions are engaged across a continuum of ethanol concentrations in Caenorhabditis elegans.

Authors:  James Dillon; Ioannis Andrianakis; Richard Mould; Ben Ient; Wei Liu; Christopher James; Vincent O'Connor; Lindy Holden-Dye
Journal:  FASEB J       Date:  2013-07-23       Impact factor: 5.191

7.  Insights into species divergence and the evolution of hermaphroditism from fertile interspecies hybrids of Caenorhabditis nematodes.

Authors:  Gavin C Woodruff; Onyinyechi Eke; Scott E Baird; Marie-Anne Félix; Eric S Haag
Journal:  Genetics       Date:  2010-09-07       Impact factor: 4.562

8.  MicroRNA sequence variation potentially contributes to within-species functional divergence in the nematode Caenorhabditis briggsae.

Authors:  Richard Jovelin; Asher D Cutter
Journal:  Genetics       Date:  2011-09-02       Impact factor: 4.562

9.  Natural variation in Caenorhabditis briggsae mitochondrial form and function suggests a novel model of organelle dynamics.

Authors:  Kiley A Hicks; Dee R Denver; Suzanne Estes
Journal:  Mitochondrion       Date:  2012-12-23       Impact factor: 4.160

10.  In vivo quantification reveals extensive natural variation in mitochondrial form and function in Caenorhabditis briggsae.

Authors:  Kiley A Hicks; Dana K Howe; Aubrey Leung; Dee R Denver; Suzanne Estes
Journal:  PLoS One       Date:  2012-08-28       Impact factor: 3.240

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