Literature DB >> 20081218

Reverse genetics techniques: engineering loss and gain of gene function in plants.

Erin Gilchrist1, George Haughn.   

Abstract

Genetic analysis represents a powerful tool that establishes a direct link between the biochemical function of a gene product and its role in vivo. Genome sequencing projects have identified large numbers of plant genes for which no role has yet been defined. To address this problem a number of techniques have been developed, over the last 15 years, to enable researchers to identify plants with mutations in genes of known sequence. These reverse genetic approaches include RNAi and related technologies and screening of populations mutagenised by insertion (PCR), deletion (PCR) and point mutation (TILLING), each with its own strengths and weaknesses. The development of next-generation sequencing techniques now allows such screening to be done by sequencing. In the future, it is likely that the genomes of thousands of plants from mutagenised populations will be sequenced allowing for the identification of plants with mutations in specific genes to be done in silico.

Mesh:

Year:  2010        PMID: 20081218     DOI: 10.1093/bfgp/elp059

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  24 in total

Review 1.  RNAi screening: new approaches, understandings, and organisms.

Authors:  Stephanie E Mohr; Norbert Perrimon
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-22       Impact factor: 9.957

Review 2.  Multigene CRISPR/Cas9 genome editing of hybrid proline rich proteins (HyPRPs) for sustainable multi-stress tolerance in crops: the review of a promising approach.

Authors:  Banashree Saikia; Sanjay Singh; Johni Debbarma; Natarajan Velmurugan; Hariprasanna Dekaboruah; Kallare P Arunkumar; Channakeshavaiah Chikkaputtaiah
Journal:  Physiol Mol Biol Plants       Date:  2020-04-20

Review 3.  New breeding technique "genome editing" for crop improvement: applications, potentials and challenges.

Authors:  Supriya B Aglawe; Kalyani M Barbadikar; Satendra K Mangrauthia; M Sheshu Madhav
Journal:  3 Biotech       Date:  2018-07-23       Impact factor: 2.406

4.  Virus-Induced Gene Silencing (VIGS) in Aegilops tauschii and Its Use in Functional Analysis of AetDREB2.

Authors:  Elahe Tavakol
Journal:  Mol Biotechnol       Date:  2018-01       Impact factor: 2.695

5.  Discovery of rare mutations in populations: TILLING by sequencing.

Authors:  Helen Tsai; Tyson Howell; Rebecca Nitcher; Victor Missirian; Brian Watson; Kathie J Ngo; Meric Lieberman; Joseph Fass; Cristobal Uauy; Robert K Tran; Asif Ali Khan; Vladimir Filkov; Thomas H Tai; Jorge Dubcovsky; Luca Comai
Journal:  Plant Physiol       Date:  2011-04-29       Impact factor: 8.340

Review 6.  Advances and perspectives in discovery and functional analysis of small secreted proteins in plants.

Authors:  Xiao-Li Hu; Haiwei Lu; Md Mahmudul Hassan; Jin Zhang; Guoliang Yuan; Paul E Abraham; Him K Shrestha; Manuel I Villalobos Solis; Jin-Gui Chen; Timothy J Tschaplinski; Mitchel J Doktycz; Gerald A Tuskan; Zong-Ming Max Cheng; Xiaohan Yang
Journal:  Hortic Res       Date:  2021-06-01       Impact factor: 6.793

7.  Evaluating the cleavage efficacy of CRISPR-Cas9 sgRNAs targeting ineffective regions of Arabidopsis thaliana genome.

Authors:  Afsheen Malik; Alvina Gul; Faiza Munir; Rabia Amir; Hadi Alipour; Mustafeez Mujtaba Babar; Syeda Marriam Bakhtiar; Rehan Zafar Paracha; Zoya Khalid; Muhammad Qasim Hayat
Journal:  PeerJ       Date:  2021-05-21       Impact factor: 2.984

8.  Reverse genetics in Chlamydomonas: a platform for isolating insertional mutants.

Authors:  David Gonzalez-Ballester; Wirulda Pootakham; Florence Mus; Wenqiang Yang; Claudia Catalanotti; Leonardo Magneschi; Amaury de Montaigu; Jose J Higuera; Matthew Prior; Aurora Galván; Emilio Fernandez; Arthur R Grossman
Journal:  Plant Methods       Date:  2011-07-27       Impact factor: 4.993

9.  Mutation scanning of peach floral genes.

Authors:  Yihua Chen; H Dayton Wilde
Journal:  BMC Plant Biol       Date:  2011-05-23       Impact factor: 4.215

10.  Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses.

Authors:  Zhiguo Zhang; Quian Zhang; Jinxia Wu; Xia Zheng; Sheng Zheng; Xuehui Sun; Quansheng Qiu; Tiegang Lu
Journal:  PLoS One       Date:  2013-02-28       Impact factor: 3.240

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