Literature DB >> 20080993

Rapid and specific method for evaluating Streptomyces competitive dynamics in complex soil communities.

Daniel C Schlatter1, Deborah A Samac, Mesfin Tesfaye, Linda L Kinkel.   

Abstract

Quantifying target microbial populations in complex communities remains a barrier to studying species interactions in soil environments. Quantitative PCR (qPCR) assays were developed for quantifying pathogenic Streptomyces scabiei and antibiotic-producing Streptomyces lavendulae strains in complex soil communities. This assay will be useful for evaluating the competitive dynamics of streptomycetes in soil.

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Year:  2010        PMID： 20080993      PMCID： PMC2837995          DOI： 10.1128/AEM.02320-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  9 in total

1.  Genetic and phenotypic traits of streptomycetes used to characterize antibiotic activities of field-collected microbes.

Authors:  Anita L Davelos; Kun Xiao; Jennifer M Flor; Linda L Kinkel
Journal:  Can J Microbiol       Date:  2004-02       Impact factor: 2.419

2.  Spatial variation in Streptomyces genetic composition and diversity in a prairie soil.

Authors:  A L Davelos; K Xiao; D A Samac; A P Martin; L L Kinkel
Journal:  Microb Ecol       Date:  2004-10-28       Impact factor: 4.552

3.  The nucleotide sequence of a 16S rRNA gene from Streptomyces coelicolor A3(2)

Authors:  H A Baylis; M J Bibb
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

4.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

5.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

6.  Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.

Authors:  S Omura; H Ikeda; J Ishikawa; A Hanamoto; C Takahashi; M Shinose; Y Takahashi; H Horikawa; H Nakazawa; T Osonoe; H Kikuchi; T Shiba; Y Sakaki; M Hattori
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

7.  Gene organization and primary structure of a ribosomal RNA gene cluster from Streptomyces griseus subsp. griseus.

Authors:  E Kim; H Kim; S P Hong; K H Kang; Y H Kho; Y H Park
Journal:  Gene       Date:  1993-09-30       Impact factor: 3.688

8.  Using the TxtAB operon to quantify pathogenic Streptomyces in potato tubers and soil.

Authors:  Xinshun Qu; Leslie A Wanner; Barbara J Christ
Journal:  Phytopathology       Date:  2008-04       Impact factor: 4.025

9.  Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.

Authors:  Yasuo Ohnishi; Jun Ishikawa; Hirofumi Hara; Hirokazu Suzuki; Miwa Ikenoya; Haruo Ikeda; Atsushi Yamashita; Masahira Hattori; Sueharu Horinouchi
Journal:  J Bacteriol       Date:  2008-03-28       Impact factor: 3.490
  9 in total
  4 in total

1.  Rapid discrimination of potato scab-causing Streptomyces species based on the RNase P RNA gene sequences.

Authors:  Hang-Yeon Weon; Jaekyeong Song; Byung-Yong Kim; On-Suk Hur; In-Cheol Park; Joo-Won Sun
Journal:  J Microbiol       Date:  2011-11-09       Impact factor: 3.422

2.  Implications of pyrosequencing error correction for biological data interpretation.

Authors:  Matthew G Bakker; Zheng J Tu; James M Bradeen; Linda L Kinkel
Journal:  PLoS One       Date:  2012-08-30       Impact factor: 3.240

3.  Diversity analysis of streptomycetes and associated phosphotranspherase genes in soil.

Authors:  Paris Laskaris; Takuya Sekine; Elizabeth M H Wellington
Journal:  PLoS One       Date:  2012-04-23       Impact factor: 3.240

4.  Detection and quantification of a mycorrhization helper bacterium and a mycorrhizal fungus in plant-soil microcosms at different levels of complexity.

Authors:  Florence Kurth; Katharina Zeitler; Lasse Feldhahn; Thomas R Neu; Tilmann Weber; Václav Krištůfek; Tesfaye Wubet; Sylvie Herrmann; François Buscot; Mika T Tarkka
Journal:  BMC Microbiol       Date:  2013-09-11       Impact factor: 3.605
  4 in total

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