Literature DB >> 20073507

New insights into the role of distal histidine flexibility in ligand stabilization of dehaloperoxidase-hemoglobin from Amphitrite ornata.

Francesco P Nicoletti1, Matthew K Thompson, Barry D Howes, Stefan Franzen, Giulietta Smulevich.   

Abstract

The present work highlights the important role played by the distal histidine in controlling the binding of heme ligands in dehaloperoxidase (DHP) as compared to myoglobin and peroxidases. In DHP the distal histidine is highly mobile and undergoes a conformational change that places it within hydrogen-bonding distance of anionic ligands and water, where strong hydrogen bonding can occur. The detailed resonance Raman (RR) analysis at room temperature shows the presence of an equilibrium between a 5-coordinate and a 6-coordinate (aquo) high-spin form. The equilibrium shifts toward the aquo form at 12 K. These two forms are consistent with the existing X-ray structures where a closed conformation, with His55 positioned in the distal pocket and H-bonded with the distal water molecule (6-coordinate), and an open solvent-exposed conformation, with the His55 displaced from the distal pocket (5-coordinate form), are in equilibrium. Moreover, the comparison between the Raman data at 298 and 12 K and the results obtained by EPR of DHP in the presence of 4-iodophenol highlights the formation of a pure 5-coordinate high-spin form (open conformation). The data reported herein support the role of His55 in facilitating the interaction of substrate and inhibitor in the regulation of enzyme function, as previously suggested. The two conformations of His55 in equilibrium at room temperature provide a level of control that permits the distal histidine to act as both the acid-base catalyst in the peroxidase mechanism and the stabilizing amino acid for exogenous heme-coordinated ligands.

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Year:  2010        PMID: 20073507     DOI: 10.1021/bi9020567

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  The peculiar heme pocket of the 2/2 hemoglobin of cold-adapted Pseudoalteromonas haloplanktis TAC125.

Authors:  Barry D Howes; Daniela Giordano; Leonardo Boechi; Roberta Russo; Simona Mucciacciaro; Chiara Ciaccio; Federica Sinibaldi; Maria Fittipaldi; Marcelo A Martí; Darío A Estrin; Guido di Prisco; Massimo Coletta; Cinzia Verde; Giulietta Smulevich
Journal:  J Biol Inorg Chem       Date:  2010-11-13       Impact factor: 3.358

2.  Internal binding of halogenated phenols in dehaloperoxidase-hemoglobin inhibits peroxidase function.

Authors:  Matthew K Thompson; Michael F Davis; Vesna de Serrano; Francesco P Nicoletti; Barry D Howes; Giulietta Smulevich; Stefan Franzen
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

3.  Spectroscopic and mechanistic investigations of dehaloperoxidase B from Amphitrite ornata.

Authors:  Jennifer D'Antonio; Edward L D'Antonio; Matthew K Thompson; Edmond F Bowden; Stefan Franzen; Tatyana Smirnova; Reza A Ghiladi
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

4.  Degradation of sulfide by dehaloperoxidase-hemoglobin from Amphitrite ornata.

Authors:  Francesco P Nicoletti; Matthew K Thompson; Stefan Franzen; Giulietta Smulevich
Journal:  J Biol Inorg Chem       Date:  2011-02-05       Impact factor: 3.358

5.  Tyrosyl radicals in dehaloperoxidase: how nature deals with evolving an oxygen-binding globin to a biologically relevant peroxidase.

Authors:  Rania Dumarieh; Jennifer D'Antonio; Alexandria Deliz-Liang; Tatyana Smirnova; Dimitri A Svistunenko; Reza A Ghiladi
Journal:  J Biol Chem       Date:  2013-10-06       Impact factor: 5.157

6.  Peroxygenase and oxidase activities of dehaloperoxidase-hemoglobin from Amphitrite ornata.

Authors:  David A Barrios; Jennifer D'Antonio; Nikolette L McCombs; Jing Zhao; Stefan Franzen; Andreas C Schmidt; Leslie A Sombers; Reza A Ghiladi
Journal:  J Am Chem Soc       Date:  2014-05-21       Impact factor: 15.419

7.  A model for the flexibility of the distal histidine in dehaloperoxidase-hemoglobin A based on X-ray crystal structures of the carbon monoxide adduct.

Authors:  Junjie Zhao; Vesna de Serrano; Stefan Franzen
Journal:  Biochemistry       Date:  2014-04-08       Impact factor: 3.162

8.  Biophysical characterisation of neuroglobin of the icefish, a natural knockout for hemoglobin and myoglobin. Comparison with human neuroglobin.

Authors:  Daniela Giordano; Ignacio Boron; Stefania Abbruzzetti; Wendy Van Leuven; Francesco P Nicoletti; Flavio Forti; Stefano Bruno; C-H Christina Cheng; Luc Moens; Guido di Prisco; Alejandro D Nadra; Darío Estrin; Giulietta Smulevich; Sylvia Dewilde; Cristiano Viappiani; Cinzia Verde
Journal:  PLoS One       Date:  2012-12-03       Impact factor: 3.240

9.  Molecular Dynamics Simulation and Kinetic Study of Fluoride Binding to V21C/V66C Myoglobin with a Cytoglobin-like Disulfide Bond.

Authors:  Lu-Lu Yin; Jia-Kun Xu; Xiao-Juan Wang; Shu-Qin Gao; Ying-Wu Lin
Journal:  Int J Mol Sci       Date:  2020-04-04       Impact factor: 5.923

  9 in total

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