Literature DB >> 20057077

Crystallization and preliminary X-ray diffraction analysis of the P3 RNA domain of yeast ribonuclease MRP in a complex with RNase P/MRP protein components Pop6 and Pop7.

Anna Perederina1, Olga Esakova, Chao Quan, Elena Khanova, Andrey S Krasilnikov.   

Abstract

Eukaryotic ribonucleases P and MRP are closely related RNA-based enzymes which contain a catalytic RNA component and several protein subunits. The roles of the protein subunits in the structure and function of eukaryotic ribonucleases P and MRP are not clear. Crystals of a complex that included a circularly permuted 46-nucleotide-long P3 domain of the RNA component of Saccharomyces cerevisiae ribonuclease MRP and selenomethionine derivatives of the shared ribonuclease P/MRP protein components Pop6 (18.2 kDa) and Pop7 (15.8 kDa) were obtained using the sitting-drop vapour-diffusion method. The crystals belonged to space group P4(2)22 (unit-cell parameters a = b = 127.2, c = 76.8 A, alpha = beta = gamma = 90 degrees ) and diffracted to 3.25 A resolution.

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Year:  2009        PMID: 20057077      PMCID: PMC2805543          DOI: 10.1107/S1744309109049707

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  34 in total

1.  A role for the catalytic ribonucleoprotein RNase P in RNA polymerase III transcription.

Authors:  Robert Reiner; Yitzhak Ben-Asouli; Ilana Krilovetzky; Nayef Jarrous
Journal:  Genes Dev       Date:  2006-06-15       Impact factor: 11.361

2.  The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.

Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

3.  Pop3p is essential for the activity of the RNase MRP and RNase P ribonucleoproteins in vivo.

Authors:  B Dichtl; D Tollervey
Journal:  EMBO J       Date:  1997-01-15       Impact factor: 11.598

4.  Protein production by auto-induction in high density shaking cultures.

Authors:  F William Studier
Journal:  Protein Expr Purif       Date:  2005-05       Impact factor: 1.650

5.  Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs.

Authors:  Anna Perederina; Olga Esakova; Hasan Koc; Mark E Schmitt; Andrey S Krasilnikov
Journal:  RNA       Date:  2007-08-23       Impact factor: 4.942

6.  A conserved element in the yeast RNase MRP RNA subunit can participate in a long-range base-pairing interaction.

Authors:  Scott C Walker; Johanna M Avis
Journal:  J Mol Biol       Date:  2004-08-06       Impact factor: 5.469

Review 7.  RNase P: increased versatility through protein complexity?

Authors:  Michael C Marvin; David R Engelke
Journal:  RNA Biol       Date:  2009-01-03       Impact factor: 4.652

Review 8.  Exploring ribozyme conformational changes with X-ray crystallography.

Authors:  Robert C Spitale; Joseph E Wedekind
Journal:  Methods       Date:  2009-06-24       Impact factor: 3.608

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Function and assembly of a chromatin-associated RNase P that is required for efficient transcription by RNA polymerase I.

Authors:  Robert Reiner; Natalie Krasnov-Yoeli; Yana Dehtiar; Nayef Jarrous
Journal:  PLoS One       Date:  2008-12-30       Impact factor: 3.240

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  5 in total

1.  The P3 domain of eukaryotic RNases P/MRP: making a protein-rich RNA-based enzyme.

Authors:  Anna Perederina; Andrey S Krasilnikov
Journal:  RNA Biol       Date:  2010-09-01       Impact factor: 4.652

Review 2.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

3.  Interactions of a Pop5/Rpp1 heterodimer with the catalytic domain of RNase MRP.

Authors:  Anna Perederina; Elena Khanova; Chao Quan; Igor Berezin; Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2011-08-30       Impact factor: 4.942

4.  Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA-protein interactions.

Authors:  Elena Khanova; Olga Esakova; Anna Perederina; Igor Berezin; Andrey S Krasilnikov
Journal:  RNA       Date:  2012-02-13       Impact factor: 4.942

5.  Footprinting analysis of interactions between the largest eukaryotic RNase P/MRP protein Pop1 and RNase P/MRP RNA components.

Authors:  Robert D Fagerlund; Anna Perederina; Igor Berezin; Andrey S Krasilnikov
Journal:  RNA       Date:  2015-07-01       Impact factor: 4.942

  5 in total

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