Literature DB >> 20053548

Structural insights into RNA interference.

Dipali G Sashital1, Jennifer A Doudna.   

Abstract

Virtually all animals and plants utilize small RNA molecules to control protein expression during different developmental stages and in response to viral infection. Structural and mechanistic studies have begun to illuminate three fundamental aspects of these pathways: small RNA biogenesis, formation of RNA-induced silencing complexes (RISCs), and targeting of complementary mRNAs. Here we review exciting recent progress in understanding how regulatory RNAs are produced and how they trigger specific destruction of mRNAs during RNA interference (RNAi). Copyright 2009 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20053548      PMCID: PMC2855239          DOI: 10.1016/j.sbi.2009.12.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  41 in total

1.  Characterization of the interactions between mammalian PAZ PIWI domain proteins and Dicer.

Authors:  Nasser Tahbaz; Fabrice A Kolb; Haidi Zhang; Katarzyna Jaronczyk; Witold Filipowicz; Tom C Hobman
Journal:  EMBO Rep       Date:  2004-01-16       Impact factor: 8.807

2.  Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.

Authors:  Jin-Biao Ma; Keqiong Ye; Dinshaw J Patel
Journal:  Nature       Date:  2004-05-20       Impact factor: 49.962

3.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

Review 4.  Slicer and the argonautes.

Authors:  Niraj H Tolia; Leemor Joshua-Tor
Journal:  Nat Chem Biol       Date:  2007-01       Impact factor: 15.040

5.  C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation.

Authors:  Ying Liu; Xuecheng Ye; Feng Jiang; Chunyang Liang; Dongmei Chen; Junmin Peng; Lisa N Kinch; Nick V Grishin; Qinghua Liu
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

Review 6.  Small RNA silencing pathways in germ and stem cells.

Authors:  A A Aravin; G J Hannon
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2009-03-06

7.  dsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi.

Authors:  Greg S Parker; Tuhin Subhra Maity; Brenda L Bass
Journal:  J Mol Biol       Date:  2008-10-11       Impact factor: 5.469

8.  Structural determinants of miRNAs for RISC loading and slicer-independent unwinding.

Authors:  Tomoko Kawamata; Hervé Seitz; Yukihide Tomari
Journal:  Nat Struct Mol Biol       Date:  2009-08-16       Impact factor: 15.369

9.  Structure of the guide-strand-containing argonaute silencing complex.

Authors:  Yanli Wang; Gang Sheng; Stefan Juranek; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2008-08-27       Impact factor: 49.962

10.  Structural insights into mechanisms of the small RNA methyltransferase HEN1.

Authors:  Ying Huang; Lijuan Ji; Qichen Huang; Dmitry G Vassylyev; Xuemei Chen; Jin-Biao Ma
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

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  37 in total

1.  Development of a siRNA and shRNA screening system based on a kinase fusion protein.

Authors:  Sofie Pieraets; Luk Cox; Olga Gielen; Jan Cools
Journal:  RNA       Date:  2012-04-26       Impact factor: 4.942

2.  Short RNA duplexes guide sequence-dependent cleavage by human Dicer.

Authors:  Lucien Bergeron; Jean-Pierre Perreault; Sherif Abou Elela
Journal:  RNA       Date:  2010-10-25       Impact factor: 4.942

3.  Minor-groove-modulating adenosine replacements control protein binding and RNAi activity in siRNAs.

Authors:  Hayden Peacock; Erik Fostvedt; Peter A Beal
Journal:  ACS Chem Biol       Date:  2010-10-07       Impact factor: 5.100

4.  Ferric, not ferrous, heme activates RNA-binding protein DGCR8 for primary microRNA processing.

Authors:  Ian Barr; Aaron T Smith; Yanqiu Chen; Rachel Senturia; Judith N Burstyn; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

5.  Single-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helices.

Authors:  Nicholas F Dupuis; Erik D Holmstrom; David J Nesbitt
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

6.  Viral RNAi suppressor reversibly binds siRNA to outcompete Dicer and RISC via multiple turnover.

Authors:  Renata A Rawlings; Vishalakshi Krishnan; Nils G Walter
Journal:  J Mol Biol       Date:  2011-02-24       Impact factor: 5.469

Review 7.  Evolution and functional diversification of MIRNA genes.

Authors:  Josh T Cuperus; Noah Fahlgren; James C Carrington
Journal:  Plant Cell       Date:  2011-02-11       Impact factor: 11.277

Review 8.  Structural diversity repertoire of gene silencing small interfering RNAs.

Authors:  Chan Il Chang; Helena Andrade Kim; Pooja Dua; Soyoun Kim; Chiang J Li; Dong-ki Lee
Journal:  Nucleic Acid Ther       Date:  2011-06       Impact factor: 5.486

9.  Regulation of the activity of the promoter of RNA-induced silencing, C3PO.

Authors:  Shriya Sahu; Leo Williams; Alberto Perez; Finly Philip; Giuseppe Caso; Walter Zurawsky; Suzanne Scarlata
Journal:  Protein Sci       Date:  2017-07-17       Impact factor: 6.725

10.  Ensemble analysis of primary microRNA structure reveals an extensive capacity to deform near the Drosha cleavage site.

Authors:  Kaycee A Quarles; Debashish Sahu; Mallory A Havens; Ellen R Forsyth; Christopher Wostenberg; Michelle L Hastings; Scott A Showalter
Journal:  Biochemistry       Date:  2013-01-18       Impact factor: 3.162

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