Literature DB >> 20051228

CTCF is a DNA methylation-sensitive positive regulator of the INK/ARF locus.

Carmen Rodriguez1, Julie Borgel, Frank Court, Guy Cathala, Thierry Forné, Jacques Piette.   

Abstract

The INK4B-ARF-INK4A (INK/ARF) locus is composed of three tumor suppressor genes, which are kept silenced by DNA methylation in different cancer types. In addition, a non-coding RNA (ANRIL) is transcribed in the anti-sense orientation upstream of the ARF gene. The resulting divergent promoter region is bound by the chromatin insulator protein CTCF in association with histone H3 tri-methylated on lysine 4, irrespective of transcription of ANRIL and ARF. Methylation of the overlapping CpG island abolishes CTCF binding and the associated modification, which can be restored by 5-Aza-2'-deoxycytidine (5-Aza-dC) treatment. shRNA knock down of CTCF expression dramatically reduces the induction of ANRIL and ARF, but also that of INK4A and INK4B expression by 5-Aza-dC. We propose that CTCF is an essential factor for transcription of the INK/ARF locus and that abrogation of its binding by DNA methylation contributes to the permanent silencing of several genes of the locus in tumors. 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20051228     DOI: 10.1016/j.bbrc.2009.12.159

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  31 in total

Review 1.  Long noncoding RNA, polycomb, and the ghosts haunting INK4b-ARF-INK4a expression.

Authors:  Francesca Aguilo; Ming-Ming Zhou; Martin J Walsh
Journal:  Cancer Res       Date:  2011-08-09       Impact factor: 12.701

Review 2.  ANRIL: a pivotal tumor suppressor long non-coding RNA in human cancers.

Authors:  Zheng Li; Xin Yu; Jianxiong Shen
Journal:  Tumour Biol       Date:  2016-01-11

3.  CTCF and cohesin cooperatively mediate the cell-type specific interchromatin interaction between Bcl11b and Arhgap6 loci.

Authors:  Licheng Ren; Minglei Shi; Yang Wang; Zhong Yang; Xiaoning Wang; Zhihu Zhao
Journal:  Mol Cell Biochem       Date:  2011-09-23       Impact factor: 3.396

Review 4.  Long non-coding RNA ANRIL in gene regulation and its duality in atherosclerosis.

Authors:  Jie-Shan Chi; Jian-Zhou Li; Jing-Jing Jia; Ting Zhang; Xiao-Ma Liu; Li Yi
Journal:  J Huazhong Univ Sci Technolog Med Sci       Date:  2017-12-21

Review 5.  Chromatin insulators: a role in nuclear organization and gene expression.

Authors:  Jingping Yang; Victor G Corces
Journal:  Adv Cancer Res       Date:  2011       Impact factor: 6.242

Review 6.  CTCF: an architectural protein bridging genome topology and function.

Authors:  Chin-Tong Ong; Victor G Corces
Journal:  Nat Rev Genet       Date:  2014-03-11       Impact factor: 53.242

7.  Disruption of CTCF/cohesin-mediated high-order chromatin structures by DNA methylation downregulates PTGS2 expression.

Authors:  J Y Kang; S H Song; J Yun; M S Jeon; H P Kim; S W Han; T Y Kim
Journal:  Oncogene       Date:  2015-02-23       Impact factor: 9.867

8.  DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas.

Authors:  Anne Y Lai; Mehrnaz Fatemi; Archana Dhasarathy; Christine Malone; Steve E Sobol; Cissy Geigerman; David L Jaye; Deepak Mav; Ruchir Shah; Leping Li; Paul A Wade
Journal:  J Exp Med       Date:  2010-08-23       Impact factor: 14.307

Review 9.  Long Non-coding RNA ANRIL and Polycomb in Human Cancers and Cardiovascular Disease.

Authors:  Francesca Aguilo; Serena Di Cecilia; Martin J Walsh
Journal:  Curr Top Microbiol Immunol       Date:  2016       Impact factor: 4.291

Review 10.  Functional genomics of the 9p21.3 locus for atherosclerosis: clarity or confusion?

Authors:  Hsiao-Huei Chen; Naif A M Almontashiri; Darlène Antoine; Alexandre F R Stewart
Journal:  Curr Cardiol Rep       Date:  2014-07       Impact factor: 2.931

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