Literature DB >> 20049414

Evidence for genetic differentiation and divergent selection in an autotetraploid forage grass (Arrhenatherum elatius).

Stefan Georg Michalski1, Walter Durka, Anke Jentsch, Juergen Kreyling, Sven Pompe, Oliver Schweiger, Evelin Willner, Carl Beierkuhnlein.   

Abstract

The use of local provenances in restoration, agriculture and forestry has been identified as measure to sustain biological diversity and to improve local productivity. However, the delineation of regional provenances is challenging because it requires the identification of well-defined groups based on spatiogenetic differentiation and/or the evidence of local adaptation. In this study, we investigate genetic variation at 186 AFLP loci in 46 European accessions of the important grassland species Arrhenatherum elatius and ask (1) whether genetic variation within accessions differs between European geographical regions; (2) at which spatial scale populations are structured across Europe and (3) whether putatively adaptive markers contribute to this pattern and whether these markers can be related to climatic site conditions. Basic expectations of population genetics are likely to be altered in autotetraploid species, thus, we adopted a band-based approach to estimate genetic diversity and structuring. Compared to other grasses A. elatius showed high genetic diversity and considerable differentiation among accessions (Phi(ST) = 0.24). Accessions separated in a Western European and a Central/Eastern European group, without further structure within groups. A genome scan approach identified four potentially adaptive loci, whose band frequencies correlated significantly with climatic parameters, suggesting that genetic differentiation in A. elatius is also the result of adaptive processes. Knowledge on adaptive loci might in the long run also help to adapt ecosystems to adverse climate change effects through assisted migration of ecotypes rather than introduction of new species.

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Year:  2010        PMID: 20049414     DOI: 10.1007/s00122-009-1242-8

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  19 in total

1.  Genetic diversity and differentiation in Eryngium alpinum L. (Apiaceae): comparison of AFLP and microsatellite markers.

Authors:  M Gaudeul; I Till-Bottraud; F Barjon; S Manel
Journal:  Heredity (Edinb)       Date:  2004-06       Impact factor: 3.821

2.  Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species.

Authors:  E Kosman; K J Leonard
Journal:  Mol Ecol       Date:  2005-02       Impact factor: 6.185

3.  How reliable are empirical genomic scans for selective sweeps?

Authors:  Kosuke M Teshima; Graham Coop; Molly Przeworski
Journal:  Genome Res       Date:  2006-05-10       Impact factor: 9.043

Review 4.  Divergent selection and heterogeneous genomic divergence.

Authors:  Patrik Nosil; Daniel J Funk; Daniel Ortiz-Barrientos
Journal:  Mol Ecol       Date:  2008-12-29       Impact factor: 6.185

5.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

6.  Analysis of population structure in autotetraploid species.

Authors:  J Ronfort; E Jenczewski; T Bataillon; F Rousset
Journal:  Genetics       Date:  1998-10       Impact factor: 4.562

7.  Potential selection in native grass populations by exotic invasion.

Authors:  Brian A Mealor; Ann L Hild
Journal:  Mol Ecol       Date:  2006-07       Impact factor: 6.185

8.  An AFLP-based survey of genetic diversity among accessions of sea oats (Uniola paniculata, Poaceae) from the southeastern Atlantic and Gulf coast states of the United States.

Authors:  Prasanta K Subudhi; Neil P Parami; Stephen A Harrison; Michael D Materne; J Paul Murphy; David Nash
Journal:  Theor Appl Genet       Date:  2005-09-30       Impact factor: 5.699

9.  Reciprocal hybrid formation of Spartina in San Francisco Bay.

Authors:  C K Anttila; R A King; C Ferris; D R Ayres; D R Strong
Journal:  Mol Ecol       Date:  2000-06       Impact factor: 6.185

10.  AFLP-based analysis to study genetic variability and relationships in the Spanish species of the genus Aegilops.

Authors:  J V Monte; P J De Nova; C Soler
Journal:  Hereditas       Date:  2001       Impact factor: 3.271

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  5 in total

Review 1.  Climate change and evolutionary adaptation.

Authors:  Ary A Hoffmann; Carla M Sgrò
Journal:  Nature       Date:  2011-02-24       Impact factor: 49.962

2.  Association analysis, genetic diversity and structure analysis of tobacco based on AFLP markers.

Authors:  Ahmad Reza Dadras; Hossein Sabouri; Ghasem Mohammadi Nejad; Atefeh Sabouri; Mardavij Shoai-Deylami
Journal:  Mol Biol Rep       Date:  2014-02-02       Impact factor: 2.316

3.  AFLP genome scan to detect genetic structure and candidate loci under selection for local adaptation of the invasive weed Mikania micrantha.

Authors:  Ting Wang; Guopei Chen; Qijie Zan; Chunbo Wang; Ying-juan Su
Journal:  PLoS One       Date:  2012-07-19       Impact factor: 3.240

4.  Isolation by elevation: genetic structure at neutral and putatively non-neutral loci in a dominant tree of subtropical forests, Castanopsis eyrei.

Authors:  Miao-Miao Shi; Stefan G Michalski; Xiao-Yong Chen; Walter Durka
Journal:  PLoS One       Date:  2011-06-20       Impact factor: 3.240

5.  Trait variation in response to varying winter temperatures, diversity patterns and signatures of selection along the latitudinal distribution of the widespread grassland plant Arrhenatherum elatius.

Authors:  Stefan G Michalski; Andrey V Malyshev; Juergen Kreyling
Journal:  Ecol Evol       Date:  2017-04-09       Impact factor: 2.912

  5 in total

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