Literature DB >> 20048137

PHD fingers: epigenetic effectors and potential drug targets.

Catherine A Musselman1, Tatiana G Kutateladze.   

Abstract

The plant homeodomain (PHD) finger is found in many chromatin-remodeling proteins. This small approximately 65-residue domain functions as an "effector" that binds specific epigenetic marks on histone tails, recruiting transcription factors and nucleosome-associated complexes to chromatin. Mutations in the PHD finger or deletion of this domain are linked to a number of human diseases, including cancer, mental retardation, and immunodeficiency. PHD finger-containing proteins may become valuable diagnostic markers and targets to prevent and treat these disorders. In this review, we highlight the progress recently made in understanding the functional significance of chromatin targeting by mammalian PHD fingers, detail the molecular mechanisms and structural features of "histone code" recognition, and discuss the therapeutic potential of PHD fingers.

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Year:  2009        PMID: 20048137      PMCID: PMC2861807          DOI: 10.1124/mi.9.6.7

Source DB:  PubMed          Journal:  Mol Interv        ISSN: 1534-0384


  76 in total

1.  Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.

Authors:  Haitao Li; Serge Ilin; Wooikoon Wang; Elizabeth M Duncan; Joanna Wysocka; C David Allis; Dinshaw J Patel
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

2.  Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.

Authors:  Pedro V Peña; Foteini Davrazou; Xiaobing Shi; Kay L Walter; Vladislav V Verkhusha; Or Gozani; Rui Zhao; Tatiana G Kutateladze
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

3.  Jade-1, a candidate renal tumor suppressor that promotes apoptosis.

Authors:  Mina I Zhou; Rebecca L Foy; Vipul C Chitalia; Jin Zhao; Maria V Panchenko; Hongmei Wang; Herbert T Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-26       Impact factor: 11.205

4.  Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A.

Authors:  Ying Huang; Jia Fang; Mark T Bedford; Yi Zhang; Rui-Ming Xu
Journal:  Science       Date:  2006-04-06       Impact factor: 47.728

Review 5.  Biological functions of the ING family tumor suppressors.

Authors:  E I Campos; M Y Chin; W H Kuo; G Li
Journal:  Cell Mol Life Sci       Date:  2004-10       Impact factor: 9.261

6.  Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation.

Authors:  Lars Riff Jensen; Marion Amende; Ulf Gurok; Bettina Moser; Verena Gimmel; Andreas Tzschach; Andreas R Janecke; Gholamali Tariverdian; Jamel Chelly; Jean-Pierre Fryns; Hilde Van Esch; Tjitske Kleefstra; Ben Hamel; Claude Moraine; Jozef Gecz; Gillian Turner; Richard Reinhardt; Vera M Kalscheuer; Hans-Hilger Ropers; Steffen Lenzner
Journal:  Am J Hum Genet       Date:  2004-12-07       Impact factor: 11.025

7.  ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation.

Authors:  Yannick Doyon; Christelle Cayrou; Mukta Ullah; Anne-Julie Landry; Valérie Côté; William Selleck; William S Lane; Song Tan; Xiang-Jiao Yang; Jacques Côté
Journal:  Mol Cell       Date:  2006-01-06       Impact factor: 17.970

8.  Novel JARID1C/SMCX mutations in patients with X-linked mental retardation.

Authors:  Andreas Tzschach; Steffen Lenzner; Bettina Moser; Richard Reinhardt; Jamel Chelly; Jean-Pierre Fryns; Tjitske Kleefstra; Martine Raynaud; Gillian Turner; Hans-Hilger Ropers; Andreas Kuss; Lars Riff Jensen
Journal:  Hum Mutat       Date:  2006-04       Impact factor: 4.878

9.  ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression.

Authors:  Xiaobing Shi; Tao Hong; Kay L Walter; Mark Ewalt; Eriko Michishita; Tiffany Hung; Dylan Carney; Pedro Peña; Fei Lan; Mohan R Kaadige; Nicolas Lacoste; Christelle Cayrou; Foteini Davrazou; Anjanabha Saha; Bradley R Cairns; Donald E Ayer; Tatiana G Kutateladze; Yang Shi; Jacques Côté; Katrin F Chua; Or Gozani
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

10.  A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling.

Authors:  Joanna Wysocka; Tomek Swigut; Hua Xiao; Thomas A Milne; So Yeon Kwon; Joe Landry; Monika Kauer; Alan J Tackett; Brian T Chait; Paul Badenhorst; Carl Wu; C David Allis
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

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  47 in total

1.  Binding of the MLL PHD3 finger to histone H3K4me3 is required for MLL-dependent gene transcription.

Authors:  Pei-Yun Chang; Robert A Hom; Catherine A Musselman; Li Zhu; Alex Kuo; Or Gozani; Tatiana G Kutateladze; Michael L Cleary
Journal:  J Mol Biol       Date:  2010-05-07       Impact factor: 5.469

2.  Druggability of methyl-lysine binding sites.

Authors:  C Santiago; K Nguyen; M Schapira
Journal:  J Comput Aided Mol Des       Date:  2011-12-07       Impact factor: 3.686

3.  Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression.

Authors:  Catherine A Musselman; Julita Ramírez; Jennifer K Sims; Robyn E Mansfield; Samuel S Oliver; John M Denu; Joel P Mackay; Paul A Wade; James Hagman; Tatiana G Kutateladze
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-03       Impact factor: 11.205

4.  SHPRH regulates rRNA transcription by recognizing the histone code in an mTOR-dependent manner.

Authors:  Deokjae Lee; Jungeun An; Young-Un Park; Hungjiun Liaw; Roger Woodgate; Jun Hong Park; Kyungjae Myung
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-11       Impact factor: 11.205

5.  Histone lysine demethylase (KDM) subfamily 4: structures, functions and therapeutic potential.

Authors:  Roselyne M Labbé; Andreana Holowatyj; Zeng-Quan Yang
Journal:  Am J Transl Res       Date:  2013-12-01       Impact factor: 4.060

Review 6.  The critical role of histone lysine demethylase KDM2B in cancer.

Authors:  Meina Yan; Xinxin Yang; Hui Wang; Qixiang Shao
Journal:  Am J Transl Res       Date:  2018-08-15       Impact factor: 4.060

7.  Genome-wide RNAi screens in human brain tumor isolates reveal a novel viability requirement for PHF5A.

Authors:  Christopher G Hubert; Robert K Bradley; Yu Ding; Chad M Toledo; Jacob Herman; Kyobi Skutt-Kakaria; Emily J Girard; Jerry Davison; Jason Berndt; Philip Corrin; Justin Hardcastle; Ryan Basom; Jeffery J Delrow; Thomas Webb; Steven M Pollard; Jeongwu Lee; James M Olson; Patrick J Paddison
Journal:  Genes Dev       Date:  2013-05-01       Impact factor: 11.361

Review 8.  Bromodomains in Protozoan Parasites: Evolution, Function, and Opportunities for Drug Development.

Authors:  Victoria Jeffers; Chunlin Yang; Sherri Huang; William J Sullivan
Journal:  Microbiol Mol Biol Rev       Date:  2017-01-11       Impact factor: 11.056

9.  PHF23 (plant homeodomain finger protein 23) negatively regulates cell autophagy by promoting ubiquitination and degradation of E3 ligase LRSAM1.

Authors:  Zhenda Wang; Jia Hu; Ge Li; Liujing Qu; Qihua He; Yaxin Lou; Quansheng Song; Dalong Ma; Yingyu Chen
Journal:  Autophagy       Date:  2014       Impact factor: 16.016

10.  Tandem PHD fingers of MORF/MOZ acetyltransferases display selectivity for acetylated histone H3 and are required for the association with chromatin.

Authors:  Muzaffar Ali; Kezhi Yan; Marie-Eve Lalonde; Cindy Degerny; Scott B Rothbart; Brian D Strahl; Jacques Côté; Xiang-Jiao Yang; Tatiana G Kutateladze
Journal:  J Mol Biol       Date:  2012-10-12       Impact factor: 5.469

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