Literature DB >> 20048062

Identification by suppression subtractive hybridization of Frankia genes induced under nitrogen-fixing conditions.

Masatoshi Yamaura1, Toshiki Uchiumi, Shiro Higashi, Mikiko Abe, Ken-Ichi Kucho.   

Abstract

Frankia is an actinobacterium that fixes nitrogen under both symbiotic and free-living conditions. We identified genes upregulated in free-living nitrogen-fixing cells by using suppression subtractive hybridization. They included genes with predicted functions related to nitrogen fixation, as well as with unknown function. Their upregulation was a novel finding in Frankia.

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Year:  2010        PMID： 20048062      PMCID： PMC2832394          DOI： 10.1128/AEM.01813-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  17 in total

1.  Suppression subtractive hybridization: a versatile method for identifying differentially expressed genes.

Authors:  L Diatchenko; S Lukyanov; Y F Lau; P D Siebert
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

2.  Homocitrate is a component of the iron-molybdenum cofactor of nitrogenase.

Authors:  T R Hoover; J Imperial; P W Ludden; V K Shah
Journal:  Biochemistry       Date:  1989-04-04       Impact factor: 3.162

3.  Equalizing cDNA subtraction based on selective suppression of polymerase chain reaction: cloning of Jurkat cell transcripts induced by phytohemaglutinin and phorbol 12-myristate 13-acetate.

Authors:  N G Gurskaya; L Diatchenko; A Chenchik; P D Siebert; G L Khaspekov; K A Lukyanov; L L Vagner; O D Ermolaeva; S A Lukyanov; E D Sverdlov
Journal:  Anal Biochem       Date:  1996-08-15       Impact factor: 3.365

4.  Transient transformation of frankia by fusion marker genes in liquid culture.

Authors:  Ken-Ichi Kucho; Kentaro Kakoi; Masatoshi Yamaura; Shiro Higashi; Toshiki Uchiumi; Mikiko Abe
Journal:  Microbes Environ       Date:  2009       Impact factor: 2.912

5.  Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.

Authors:  Philippe Normand; Pascal Lapierre; Louis S Tisa; Johann Peter Gogarten; Nicole Alloisio; Emilie Bagnarol; Carla A Bassi; Alison M Berry; Derek M Bickhart; Nathalie Choisne; Arnaud Couloux; Benoit Cournoyer; Stephane Cruveiller; Vincent Daubin; Nadia Demange; Maria Pilar Francino; Eugene Goltsman; Ying Huang; Olga R Kopp; Laurent Labarre; Alla Lapidus; Celine Lavire; Joelle Marechal; Michele Martinez; Juliana E Mastronunzio; Beth C Mullin; James Niemann; Pierre Pujic; Tania Rawnsley; Zoe Rouy; Chantal Schenowitz; Anita Sellstedt; Fernando Tavares; Jeffrey P Tomkins; David Vallenet; Claudio Valverde; Luis G Wall; Ying Wang; Claudine Medigue; David R Benson
Journal:  Genome Res       Date:  2006-12-06       Impact factor: 9.043

6.  Hopanoid lipids compose the Frankia vesicle envelope, presumptive barrier of oxygen diffusion to nitrogenase.

Authors:  A M Berry; O T Harriott; R A Moreau; S F Osman; D R Benson; A D Jones
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

Review 7.  Multiple roles of siderophores in free-living nitrogen-fixing bacteria.

Authors:  A M L Kraepiel; J P Bellenger; T Wichard; F M M Morel
Journal:  Biometals       Date:  2009-03-10       Impact factor: 2.949

8.  Factors affecting vesicle formation and acetylene reduction (nitrogenase activity) in Frankia sp. CpI1.

Authors:  J D Tjepkema; W Ormerod; J G Torrey
Journal:  Can J Microbiol       Date:  1981-08       Impact factor: 2.419

Review 9.  Mechanism of Mo-dependent nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; Dennis R Dean
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

10.  Effects of disruption of homocitrate synthase genes on Nostoc sp. strain PCC 7120 photobiological hydrogen production and nitrogenase.

Authors:  Hajime Masukawa; Kazuhito Inoue; Hidehiro Sakurai
Journal:  Appl Environ Microbiol       Date:  2007-10-12       Impact factor: 4.792
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  1 in total

1.  Transcriptome Analysis of Paraburkholderia phymatum under Nitrogen Starvation and during Symbiosis with Phaseolus Vulgaris.

Authors:  Martina Lardi; Yilei Liu; Gabriela Purtschert; Samanta Bolzan de Campos; Gabriella Pessi
Journal:  Genes (Basel)       Date:  2017-12-15       Impact factor: 4.096
  1 in total

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